This Code Ocean Compute Capsule will allow you to run and reproduce the results of aind-ophys-suite2p-motion-correction on your local machine1. Follow the instructions below, or consult our knowledge base for more information. Don't hesitate to reach out via live chat or email if you have any questions.
1 You may need access to additional hardware and/or software licenses.
In order to fetch the Data Asset(s) this Capsule depends on, download them into the Capsule's data folder:
- Other_667826_2023-04-10_16-08-00 should be downloaded to
data/Other_667826_2023-04-10_16-08-00
In your terminal, execute the following command, providing your password or API key when prompted for it:
docker login -u [email protected] registry.codeocean.allenneuraldynamics.orgIn your terminal, navigate to the folder where you've extracted the Capsule and execute the following command, adjusting parameters as needed:
docker run --platform linux/amd64 --rm \
--workdir /code \
--volume "$PWD/code":/code \
--volume "$PWD/data":/data \
--volume "$PWD/results":/results \
registry.codeocean.allenneuraldynamics.org/capsule/284b5530-c9a4-4ad7-b19e-3e964facbdda \
bash run