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Patricia Tran edited this page May 22, 2020 · 28 revisions

Welcome to the METABOLIC wiki!

METABOLIC

METabolic And BiogeOchemistry anaLyses In miCrobes
Version 3.0

This software enables the prediction of metabolic and biogeochemical functional trait profiles to any given genome datasets. These genome datasets can either be metagenome-assembled genomes (MAGs), single-cell amplified genomes (SAGs) or pure culture sequenced genomes. It can also calculate the genome coverage. The information is parsed and diagrams for elemental/biogeochemical cycling pathways (currently Nitrogen, Carbon, Sulfur and "other") are produced.

Copyright:

Zhichao Zhou, [email protected]
Patricia Tran, [email protected]
Karthik Anantharaman, [email protected]
Anantharaman Microbiome Laboratory
Department of Bacteriology, University of Wisconsin, Madison

If you are using this program, please consider citing our preprint, available on BioRxiv

    Zhou Z, Tran P, Liu Y, Kieft K, Anantharaman K. "METABOLIC: A scalable high-throughput metabolic and biogeochemical functional trait profiler based on microbial genomes" (2019). BioRxiv doi: https://doi.org/10.1101/761643

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