_pkgdown.yml

url: http://bioinformatics.mdc-berlin.de/anglemania/
template:
  bootstrap: 5
reference:
- title: Main
  desc: |
    The two functions for running anglemania.
  contents:
  - create_anglemania_object
  - anglemania
- title: Computation of Statistics
  desc: |
    Functions that work behind the scenes of anglemania to get the statistics.
  contents:
  - factorise
  - extract_angles
- title: Utilities
  desc: |
    anglemania utilities.
  contents:
  - sparse_to_fbm
  - get_dstat
  - big_mat_list_mean
  - get_list_stats
  - extract_rows_for_unique_genes
  - select_genes
  - integrate_by_features
  - integrate_seurat_list
- title: Anglem Object Helpers
  desc: |
    Helper functions to access and set anglem object attributes.
  contents:
  - anglemania_object-class
  - matrix_list
  - matrix_list<-
  - dataset_key
  - batch_key
  - data_info
  - angl_weights
  - angl_weights<-
  - list_stats
  - list_stats<-
  - intersect_genes
  - intersect_genes<-
  - get_anglemania_genes
  - add_unique_batch_key
articles:
- title: Articles
  navbar: ~
  contents: anglemania_tutorial