diff --git a/PAF/good2.paf b/PAF/good2.paf index 7618f1b..6f7a34b 100644 --- a/PAF/good2.paf +++ b/PAF/good2.paf @@ -1,4 +1,4 @@ -中国科学院大学 2147483647 3 301145 + CP004047.1 6701780 6115750 6416892 301142 301142 0 tp:A:S cm:i:29990 s1:i:301142 dv:f:-13.2442e-18 rl:i:0000 xX:H:ea19fe1b K1:B:c15,9,22,127,-12,-128,0 +中国科学院大学 2147483647 3 301145 + CP004047.1 6701780 6115750 6416892 301142 301142 0 tp:A:S cm:i:29990 s1:i:301142 dv:f:-13.2442e-18 rl:i:0000 xX:H:ea19fe1b K1:B:c,15,9,22,127,-12,-128,0 [[[\]\]] 299273 0 299273 - CP015426.1 3334732 950389 1249662 299269 299273 0 dv:f:1.243e-4 rl:i:38 kk:Z:!=[]! And then~~ 299273 0 299273 + CP015427.1 3346636 2317212 2622051 299252 304839 0 dv:f:+17e21 rl:i:38 diff --git a/PAF/good3.paf b/PAF/good3.paf new file mode 100644 index 0000000..87ce2b2 --- /dev/null +++ b/PAF/good3.paf @@ -0,0 +1,2 @@ +query 56 3 52 * * 5298872 2793194 2793243 49 49 0 tp:A:S cm:i:4 s1:i:49 dv:f:0.0117 rl:i:0 +another 9 0 4 + abc 5 1 5 4 4 0 diff --git a/PAF/index.toml b/PAF/index.toml index 853c1f7..afd71d0 100644 --- a/PAF/index.toml +++ b/PAF/index.toml @@ -11,3 +11,9 @@ comments = [ "Zero-length name field", "Various AUX tags", ] + +[[valid]] +filename = "good3.paf" +comments = [ + "Unmapped record" +] diff --git a/Project.toml b/Project.toml index 8a6c9d3..61c393d 100644 --- a/Project.toml +++ b/Project.toml @@ -1,7 +1,7 @@ name = "FormatSpecimens" uuid = "3372ea36-2a1a-11e9-3eb7-996970b6ffbd" authors = ["Ben J. Ward