This package parses STRIDE and DSSP secondary structure prediction outputs, to make them convenient to use from Julia, particularly for the analysis of MD simulations.
Go to: https://BioJulia.github.io/ProteinSecondaryStructures.jl
If you use the STRIDE algorithm for secondary structure prediction, please cite:
- Frishman,D & Argos,P. (1995) Knowledge-based secondary structure assignment. Proteins: structure, function and genetics, 23, 566-579.
- Kabsch,W. & Sander,C. (1983) Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features. Biopolymers, 22: 2577-2637.
If you use the DSSP algorithm for secondary structure prediction, please cite:
- Joosten RP, te Beek TAH, Krieger E, Hekkelman ML, Hooft RWW, Schneider R, Sander C, Vriend A series of PDB related databases for everyday needs. Nuc. Acids Res. 2010; 39:D411-D419.
- Kabsch W, Sander C. Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features. Biopolymers 1983; 22:2577-2637.