- Optional testthat variationalSequences() evaulate presence of Keras
- Drop evaluation of variationalSequences() example
- Vignette includes eval of keras installation for certain chunks
- Fix issue with optimizer call in
variationalSequences() - Move package to keras3
- Version Bump to be consistent with Bioconductor release
- Remove keras installation in vignette
- Removed lazydata loading
- Added @return to the data manual entries
- Update stop message for
propertyEncoder() - Removed set.seed from
variationalSequences() - Added runnable example for
variationalSequences() - Added better handling of no connection in
getIMGT() - Added max.retries to
getIMGT() - Updated testthat for new IMGT version
- Defining python version 3.10 for keras installation
- Added discrete check and install_keras() to vignette
- Added warning to
getIMGT()to mention IMGT license on first use - import magrittr instead of dplyr
- Fixed issue with license error
- Added example to
positionalEncoder() - Replaced discrete calling of "es =" in vignette
- Update readme to include keras based installation
- added set.seed() to vignette
- added introduction section to vignette with mention of other packages
- removed installation section from vignette (can't add BioC instructions until accepted)
- Fixed rendering issue with the vignette
- Subsampled example data and removed Omniscope example
- Updated testthat for
formatGenes()andinferCDR()for new example data - Reduced size of test data
- Minimized usage of sapply() and X:Y per BiocCheck suggestions
- Modified print() messages to messages()
- Add verbose parameter to turn on/off processing steps
- Added links for example data formats