You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
File /mnt/data0/arun/code/python/clearMap/CellMap_fromClearMap.py:304 in transformation
coordinates = elx.transform_points(
File ~/miniconda3/envs/ClearMapUi39/lib/python3.9/site-packages/ClearMap2-2.1.0-py3.9-linux-x86_64.egg/ClearMap/Alignment/Elastix.py:952 in transform_points
set_path_transform_files(transform_parameter_dir)
File ~/miniconda3/envs/ClearMapUi39/lib/python3.9/site-packages/ClearMap2-2.1.0-py3.9-linux-x86_64.egg/ClearMap/Alignment/Elastix.py:336 in set_path_transform_files
shutil.move(tmpfn, ff)
File ~/miniconda3/envs/ClearMapUi39/lib/python3.9/shutil.py:845 in move
copy_function(src, real_dst)
File ~/miniconda3/envs/ClearMapUi39/lib/python3.9/shutil.py:445 in copy2
copystat(src, dst, follow_symlinks=follow_symlinks)
File ~/miniconda3/envs/ClearMapUi39/lib/python3.9/shutil.py:384 in copystat
lookup("utime")(dst, ns=(st.st_atime_ns, st.st_mtime_ns),
PermissionError: [Errno 1] Operation not permitted
The text was updated successfully, but these errors were encountered:
Hi,
I am getting the following copy error during the cell alignment part of the code. Can you please help me fix the error.
Thanks,
Arun
907 -1.045990 157.733406 0.016110 23.7
Traceback (most recent call last):
File ~/miniconda3/envs/ClearMapUi39/lib/python3.9/shutil.py:825 in move
os.rename(src, real_dst)
OSError: [Errno 18] Invalid cross-device link: '/tmp/tmpzvvf54_z' -> '/mnt/data0/arun/data/409/elastix_resampled_to_auto/TransformParameters.0.txt'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File ~/miniconda3/envs/ClearMapUi39/lib/python3.9/site-packages/spyder_kernels/py3compat.py:356 in compat_exec
exec(code, globals, locals)
File /mnt/data0/arun/code/python/clearMap/CellMap_fromClearMap.py:319
coordinates_transformed = transformation(coordinates);
File /mnt/data0/arun/code/python/clearMap/CellMap_fromClearMap.py:304 in transformation
coordinates = elx.transform_points(
File ~/miniconda3/envs/ClearMapUi39/lib/python3.9/site-packages/ClearMap2-2.1.0-py3.9-linux-x86_64.egg/ClearMap/Alignment/Elastix.py:952 in transform_points
set_path_transform_files(transform_parameter_dir)
File ~/miniconda3/envs/ClearMapUi39/lib/python3.9/site-packages/ClearMap2-2.1.0-py3.9-linux-x86_64.egg/ClearMap/Alignment/Elastix.py:336 in set_path_transform_files
shutil.move(tmpfn, ff)
File ~/miniconda3/envs/ClearMapUi39/lib/python3.9/shutil.py:845 in move
copy_function(src, real_dst)
File ~/miniconda3/envs/ClearMapUi39/lib/python3.9/shutil.py:445 in copy2
copystat(src, dst, follow_symlinks=follow_symlinks)
File ~/miniconda3/envs/ClearMapUi39/lib/python3.9/shutil.py:384 in copystat
lookup("utime")(dst, ns=(st.st_atime_ns, st.st_mtime_ns),
PermissionError: [Errno 1] Operation not permitted
The text was updated successfully, but these errors were encountered: