ClearMap GUI missing "Run detection" button

[ved-sharma]

Hello,

I installed v2.1.4 on an Ubuntu 22.04 machine with no issues. I could also go through the pipeline in the GUI with tabs Sample, Alignment and Cellmap, until the Cell detection part, where I tested the parameters on a cropped region as discussed in the document here. When I tried to run the cell detection for the whole tissue, I noticed that in my GUI the button "Run detection" is missing. Compare Figure 4 on this page with the screenshot of my GUI below:

Any idea on how I can proceed further?
FYI - I installed vtk, as was suggested in the Log file. This made scrolling through the data smoother. Let me know if you need more details.

Thanks!
Ved

[crousseau]

Hi,
@ved-sharma
It has been moved under RunCellMap. I need to update the documentation but I'm rushing for the version 3 at the moment.
Let me know if you still have issues