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CAT doesn't carry over GENCODE tag information #322

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diekhans opened this issue Jan 13, 2025 · 0 comments

Contributor

diekhans commented Jan 13, 2025

A browser CHM13 users was confused by CHM13_T0119487 RRM2

They didn't understand why the start codon was missing. It has

Status of CDS start annotation cmpl
Status of CDS end annotation cmpl

transcript type: nonsense_mediated_decay

The source gencode transcript has cds_start_NF mRNA_start_NF
indicating it is incomplete.

Also, this is colored as a non-coding gene, which GENCODE tracks condider it coding

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