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Duplicate symbol _blake2b_init_key causes build failure on OS X Sierra #7

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conor10 opened this issue Dec 21, 2016 · 3 comments
Closed

Duplicate symbol _blake2b_init_key causes build failure on OS X Sierra #7

conor10 opened this issue Dec 21, 2016 · 3 comments

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@conor10
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conor10 commented Dec 21, 2016

Constellation will not build on OS X Sierra. This is due to both Argon2 and cryptonite exporting the same blake2b.c library symbols.

Details are available in the following threads:

haskell-crypto/cryptonite#109
haskell-hvr/argon2#10

Details of my setup are below.

  • haskell-stack 1.3.0 (which installed ghc-8.0.1)
  • berkeley-db-6.1.26
  • libsodium-1.0.11
$ stack install
constellation-0.1.0.0: build (lib + exe)
Preprocessing library constellation-0.1.0.0...
Preprocessing executable 'constellation-enclave-keygen' for
constellation-0.1.0.0...
Linking .stack-work/dist/x86_64-osx/Cabal-1.24.0.0/build/constellation-enclave-keygen/constellation-enclave-keygen ...
duplicate symbol _blake2b_init_key in:
    /Users/xxx/.stack/snapshots/x86_64-osx/lts-7.5/8.0.1/lib/x86_64-osx-ghc-8.0.1/cryptonite-0.19-G9PYO4oOEqhDTta2u9rAaU/libHScryptonite-0.19-G9PYO4oOEqhDTta2u9rAaU.a(blake2b.o)
    /Users/xxx/code/quorum/constellation/.stack-work/install/x86_64-osx/lts-7.5/8.0.1/lib/x86_64-osx-ghc-8.0.1/argon2-1.2.0-GzhheWYu2saHa29BPiZeRb/libHSargon2-1.2.0-GzhheWYu2saHa29BPiZeRb.a(blake2b.o)
duplicate symbol _blake2b_init in:
    /Users/xxx/.stack/snapshots/x86_64-osx/lts-7.5/8.0.1/lib/x86_64-osx-ghc-8.0.1/cryptonite-0.19-G9PYO4oOEqhDTta2u9rAaU/libHScryptonite-0.19-G9PYO4oOEqhDTta2u9rAaU.a(blake2b.o)
    /Users/xxx/code/quorum/constellation/.stack-work/install/x86_64-osx/lts-7.5/8.0.1/lib/x86_64-osx-ghc-8.0.1/argon2-1.2.0-GzhheWYu2saHa29BPiZeRb/libHSargon2-1.2.0-GzhheWYu2saHa29BPiZeRb.a(blake2b.o)
duplicate symbol _blake2b_init_param in:
    /Users/xxx/.stack/snapshots/x86_64-osx/lts-7.5/8.0.1/lib/x86_64-osx-ghc-8.0.1/cryptonite-0.19-G9PYO4oOEqhDTta2u9rAaU/libHScryptonite-0.19-G9PYO4oOEqhDTta2u9rAaU.a(blake2b.o)
    /Users/xxx/code/quorum/constellation/.stack-work/install/x86_64-osx/lts-7.5/8.0.1/lib/x86_64-osx-ghc-8.0.1/argon2-1.2.0-GzhheWYu2saHa29BPiZeRb/libHSargon2-1.2.0-GzhheWYu2saHa29BPiZeRb.a(blake2b.o)
duplicate symbol _blake2b_final in:
    /Users/xxx/.stack/snapshots/x86_64-osx/lts-7.5/8.0.1/lib/x86_64-osx-ghc-8.0.1/cryptonite-0.19-G9PYO4oOEqhDTta2u9rAaU/libHScryptonite-0.19-G9PYO4oOEqhDTta2u9rAaU.a(blake2b.o)
    /Users/xxx/code/quorum/constellation/.stack-work/install/x86_64-osx/lts-7.5/8.0.1/lib/x86_64-osx-ghc-8.0.1/argon2-1.2.0-GzhheWYu2saHa29BPiZeRb/libHSargon2-1.2.0-GzhheWYu2saHa29BPiZeRb.a(blake2b.o)
duplicate symbol _blake2b_update in:
    /Users/xxx/.stack/snapshots/x86_64-osx/lts-7.5/8.0.1/lib/x86_64-osx-ghc-8.0.1/cryptonite-0.19-G9PYO4oOEqhDTta2u9rAaU/libHScryptonite-0.19-G9PYO4oOEqhDTta2u9rAaU.a(blake2b.o)
    /Users/xxx/code/quorum/constellation/.stack-work/install/x86_64-osx/lts-7.5/8.0.1/lib/x86_64-osx-ghc-8.0.1/argon2-1.2.0-GzhheWYu2saHa29BPiZeRb/libHSargon2-1.2.0-GzhheWYu2saHa29BPiZeRb.a(blake2b.o)
duplicate symbol _blake2b in:
    /Users/xxx/.stack/snapshots/x86_64-osx/lts-7.5/8.0.1/lib/x86_64-osx-ghc-8.0.1/cryptonite-0.19-G9PYO4oOEqhDTta2u9rAaU/libHScryptonite-0.19-G9PYO4oOEqhDTta2u9rAaU.a(blake2b.o)
    /Users/xxx/code/quorum/constellation/.stack-work/install/x86_64-osx/lts-7.5/8.0.1/lib/x86_64-osx-ghc-8.0.1/argon2-1.2.0-GzhheWYu2saHa29BPiZeRb/libHSargon2-1.2.0-GzhheWYu2saHa29BPiZeRb.a(blake2b.o)
ld: 6 duplicate symbols for architecture x86_64
clang: error: linker command failed with exit code 1 (use -v to see invocation)
`gcc' failed in phase `Linker'. (Exit code: 1)

--  While building package constellation-0.1.0.0 using:
      /Users/xxx/.stack/setup-exe-cache/x86_64-osx/Cabal-simple_mPHDZzAJ_1.24.0.0_ghc-8.0.1 --builddir=.stack-work/dist/x86_64-osx/Cabal-1.24.0.0 build lib:constellation exe:constellation-enclave-keygen exe:constellation-node --ghc-options " -ddump-hi -ddump-to-file"
    Process exited with code: ExitFailure 1

XCode GCC version:

Configured with: --prefix=/Applications/Xcode.app/Contents/Developer/usr --with-gxx-include-dir=/usr/include/c++/4.2.1
Apple LLVM version 8.0.0 (clang-800.0.42.1)
Target: x86_64-apple-darwin16.1.0
Thread model: posix
InstalledDir: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin

Verbose output:

$ stack install -v
Version 1.3.0 x86_64 hpack-0.15.0
2016-12-21 11:41:17.745595: [debug] Checking for project config at: /Users/xxx/code/quorum/constellation/stack.yaml
@(Stack/Config.hs:863:9)
2016-12-21 11:41:17.747020: [debug] Loading project config file stack.yaml
@(Stack/Config.hs:881:13)
2016-12-21 11:41:17.748878: [debug] Trying to decode /Users/xxx/.stack/build-plan-cache/x86_64-osx/lts-7.5.cache
@(Data/Store/VersionTagged.hs:68:5)
2016-12-21 11:41:17.762898: [debug] Success decoding /Users/xxx/.stack/build-plan-cache/x86_64-osx/lts-7.5.cache
@(Data/Store/VersionTagged.hs:72:13)
2016-12-21 11:41:17.767066: [debug] Using standard GHC build
@(Stack/Setup.hs:597:9)
2016-12-21 11:41:17.767507: [debug] Getting global package database location
@(Stack/GhcPkg.hs:55:5)
2016-12-21 11:41:17.767911: [debug] Run process: /Users/xxx/.stack/programs/x86_64-osx/ghc-8.0.1/bin/ghc-pkg --no-user-package-db list --global
@(System/Process/Read.hs:306:3)
2016-12-21 11:41:17.768039: [debug] Asking GHC for its version
@(Stack/Setup/Installed.hs:103:13)
2016-12-21 11:41:17.769079: [debug] Getting Cabal package version
@(Stack/GhcPkg.hs:170:5)
2016-12-21 11:41:17.769220: [debug] Run process: /Users/xxx/.stack/programs/x86_64-osx/ghc-8.0.1/bin/ghc --numeric-version
@(System/Process/Read.hs:306:3)
2016-12-21 11:41:17.769342: [debug] Run process: /Users/xxx/.stack/programs/x86_64-osx/ghc-8.0.1/bin/ghc-pkg --no-user-package-db field --simple-output Cabal version
@(System/Process/Read.hs:306:3)
2016-12-21 11:41:17.842879: [debug] Process finished in 74ms: /Users/xxx/.stack/programs/x86_64-osx/ghc-8.0.1/bin/ghc-pkg --no-user-package-db list --global
@(System/Process/Read.hs:306:3)
2016-12-21 11:41:17.848030: [debug] Process finished in 77ms: /Users/xxx/.stack/programs/x86_64-osx/ghc-8.0.1/bin/ghc-pkg --no-user-package-db field --simple-output Cabal version
@(System/Process/Read.hs:306:3)
2016-12-21 11:41:17.888978: [debug] Process finished in 119ms: /Users/xxx/.stack/programs/x86_64-osx/ghc-8.0.1/bin/ghc --numeric-version
@(System/Process/Read.hs:306:3)
2016-12-21 11:41:17.889178: [debug] Resolving package entries
@(Stack/Setup.hs:252:5)
2016-12-21 11:41:17.889710: [debug] Starting to execute command inside EnvConfig
@(Stack/Runners.hs:163:18)
2016-12-21 11:41:17.889807: [debug] Parsing the cabal files of the local packages
@(Stack/Build/Source.hs:298:5)
2016-12-21 11:41:17.910327: [debug] Parsing the targets
@(Stack/Build/Source.hs:235:5)
2016-12-21 11:41:17.911035: [debug] Start: getPackageFiles /Users/xxx/code/quorum/constellation/constellation.cabal
@(Stack/Package.hs:250:21)
2016-12-21 11:41:17.970499: [debug] Finished in 57ms: getPackageFiles /Users/xxx/code/quorum/constellation/constellation.cabal
@(Stack/Package.hs:250:21)
2016-12-21 11:41:17.972337: [debug] Finding out which packages are already installed
@(Stack/Build/Installed.hs:68:5)
2016-12-21 11:41:17.972640: [debug] Run process: /Users/xxx/.stack/programs/x86_64-osx/ghc-8.0.1/bin/ghc-pkg --global --no-user-package-db dump --expand-pkgroot
@(System/Process/Read.hs:306:3)
2016-12-21 11:41:18.020985: [debug] Process finished in 48ms: /Users/xxx/.stack/programs/x86_64-osx/ghc-8.0.1/bin/ghc-pkg --global --no-user-package-db dump --expand-pkgroot
@(System/Process/Read.hs:306:3)
2016-12-21 11:41:18.038834: [debug] Run process: /Users/xxx/.stack/programs/x86_64-osx/ghc-8.0.1/bin/ghc-pkg --user --no-user-package-db --package-db /Users/xxx/.stack/snapshots/x86_64-osx/lts-7.5/8.0.1/pkgdb dump --expand-pkgroot
@(System/Process/Read.hs:306:3)
2016-12-21 11:41:18.186934: [debug] Process finished in 147ms: /Users/xxx/.stack/programs/x86_64-osx/ghc-8.0.1/bin/ghc-pkg --user --no-user-package-db --package-db /Users/xxx/.stack/snapshots/x86_64-osx/lts-7.5/8.0.1/pkgdb dump --expand-pkgroot
@(System/Process/Read.hs:306:3)
2016-12-21 11:41:18.188323: [debug] Run process: /Users/xxx/.stack/programs/x86_64-osx/ghc-8.0.1/bin/ghc-pkg --user --no-user-package-db --package-db /Users/xxx/code/quorum/constellation/.stack-work/install/x86_64-osx/lts-7.5/8.0.1/pkgdb dump --expand-pkgroot
@(System/Process/Read.hs:306:3)
2016-12-21 11:41:18.229435: [debug] Process finished in 40ms: /Users/xxx/.stack/programs/x86_64-osx/ghc-8.0.1/bin/ghc-pkg --user --no-user-package-db --package-db /Users/xxx/code/quorum/constellation/.stack-work/install/x86_64-osx/lts-7.5/8.0.1/pkgdb dump --expand-pkgroot
@(System/Process/Read.hs:306:3)
2016-12-21 11:41:18.238547: [debug] Constructing the build plan
@(Stack/Build/ConstructPlan.hs:159:5)
2016-12-21 11:41:18.239401: [debug] Trying to decode /Users/xxx/.stack/indices/Hackage/00-index.cache
@(Data/Store/VersionTagged.hs:68:5)
2016-12-21 11:41:18.431973: [debug] Success decoding /Users/xxx/.stack/indices/Hackage/00-index.cache
@(Data/Store/VersionTagged.hs:72:13)
2016-12-21 11:41:18.587241: [debug] Checking if we are going to build multiple executables with the same name
@(Stack/Build.hs:196:5)
2016-12-21 11:41:18.587626: [debug] Executing the build plan
@(Stack/Build/Execute.hs:454:5)
2016-12-21 11:41:18.588661: [debug] Getting global package database location
@(Stack/GhcPkg.hs:55:5)
2016-12-21 11:41:18.588813: [debug] Run process: /Users/xxx/.stack/programs/x86_64-osx/ghc-8.0.1/bin/ghc-pkg --no-user-package-db list --global
@(System/Process/Read.hs:306:3)
2016-12-21 11:41:18.627094: [debug] Process finished in 38ms: /Users/xxx/.stack/programs/x86_64-osx/ghc-8.0.1/bin/ghc-pkg --no-user-package-db list --global
@(System/Process/Read.hs:306:3)
2016-12-21 11:41:18.629225: [debug] Encoding /Users/xxx/code/quorum/constellation/.stack-work/dist/x86_64-osx/Cabal-1.24.0.0/stack-build-cache
@(Data/Store/VersionTagged.hs:51:5)
2016-12-21 11:41:18.629967: [debug] Finished writing /Users/xxx/code/quorum/constellation/.stack-work/dist/x86_64-osx/Cabal-1.24.0.0/stack-build-cache
@(Data/Store/VersionTagged.hs:55:5)
2016-12-21 11:41:18.630108: [info] constellation-0.1.0.0: build (lib + exe)
@(Stack/Build/Execute.hs:826:23)
2016-12-21 11:41:18.630569: [debug] Run process: /Users/xxx/.stack/setup-exe-cache/x86_64-osx/Cabal-simple_mPHDZzAJ_1.24.0.0_ghc-8.0.1 --builddir=.stack-work/dist/x86_64-osx/Cabal-1.24.0.0 build lib:constellation exe:constellation-enclave-keygen exe:constellation-node --ghc-options " -ddump-hi -ddump-to-file"
@(System/Process/Read.hs:306:3)
2016-12-21 11:41:18.812676: [info] Preprocessing library constellation-0.1.0.0...
@(Stack/Build/Execute.hs:1013:67)
2016-12-21 11:41:21.881973: [info] Preprocessing executable 'constellation-enclave-keygen' for
@(Stack/Build/Execute.hs:1013:67)
2016-12-21 11:41:21.882177: [info] constellation-0.1.0.0...
@(Stack/Build/Execute.hs:1013:67)
2016-12-21 11:41:22.304909: [info] Linking .stack-work/dist/x86_64-osx/Cabal-1.24.0.0/build/constellation-enclave-keygen/constellation-enclave-keygen ...
@(Stack/Build/Execute.hs:1013:67)
2016-12-21 11:41:23.673075: [warn] duplicate symbol _blake2b_init_key in:
@(Stack/Build/Execute.hs:1013:67)
2016-12-21 11:41:23.673226: [warn]     /Users/xxx/.stack/snapshots/x86_64-osx/lts-7.5/8.0.1/lib/x86_64-osx-ghc-8.0.1/cryptonite-0.19-G9PYO4oOEqhDTta2u9rAaU/libHScryptonite-0.19-G9PYO4oOEqhDTta2u9rAaU.a(blake2b.o)
@(Stack/Build/Execute.hs:1013:67)
2016-12-21 11:41:23.673321: [warn]     /Users/xxx/code/quorum/constellation/.stack-work/install/x86_64-osx/lts-7.5/8.0.1/lib/x86_64-osx-ghc-8.0.1/argon2-1.2.0-GzhheWYu2saHa29BPiZeRb/libHSargon2-1.2.0-GzhheWYu2saHa29BPiZeRb.a(blake2b.o)
@(Stack/Build/Execute.hs:1013:67)
2016-12-21 11:41:23.673444: [warn] duplicate symbol _blake2b_init in:
@(Stack/Build/Execute.hs:1013:67)
2016-12-21 11:41:23.673518: [warn]     /Users/xxx/.stack/snapshots/x86_64-osx/lts-7.5/8.0.1/lib/x86_64-osx-ghc-8.0.1/cryptonite-0.19-G9PYO4oOEqhDTta2u9rAaU/libHScryptonite-0.19-G9PYO4oOEqhDTta2u9rAaU.a(blake2b.o)
@(Stack/Build/Execute.hs:1013:67)
2016-12-21 11:41:23.673584: [warn]     /Users/xxx/code/quorum/constellation/.stack-work/install/x86_64-osx/lts-7.5/8.0.1/lib/x86_64-osx-ghc-8.0.1/argon2-1.2.0-GzhheWYu2saHa29BPiZeRb/libHSargon2-1.2.0-GzhheWYu2saHa29BPiZeRb.a(blake2b.o)
@(Stack/Build/Execute.hs:1013:67)
2016-12-21 11:41:23.673667: [warn] duplicate symbol _blake2b_init_param in:
@(Stack/Build/Execute.hs:1013:67)
2016-12-21 11:41:23.673731: [warn]     /Users/xxx/.stack/snapshots/x86_64-osx/lts-7.5/8.0.1/lib/x86_64-osx-ghc-8.0.1/cryptonite-0.19-G9PYO4oOEqhDTta2u9rAaU/libHScryptonite-0.19-G9PYO4oOEqhDTta2u9rAaU.a(blake2b.o)
@(Stack/Build/Execute.hs:1013:67)
2016-12-21 11:41:23.673794: [warn]     /Users/xxx/code/quorum/constellation/.stack-work/install/x86_64-osx/lts-7.5/8.0.1/lib/x86_64-osx-ghc-8.0.1/argon2-1.2.0-GzhheWYu2saHa29BPiZeRb/libHSargon2-1.2.0-GzhheWYu2saHa29BPiZeRb.a(blake2b.o)
@(Stack/Build/Execute.hs:1013:67)
2016-12-21 11:41:23.673930: [warn] duplicate symbol _blake2b_final in:
@(Stack/Build/Execute.hs:1013:67)
2016-12-21 11:41:23.673995: [warn]     /Users/xxx/.stack/snapshots/x86_64-osx/lts-7.5/8.0.1/lib/x86_64-osx-ghc-8.0.1/cryptonite-0.19-G9PYO4oOEqhDTta2u9rAaU/libHScryptonite-0.19-G9PYO4oOEqhDTta2u9rAaU.a(blake2b.o)
@(Stack/Build/Execute.hs:1013:67)
2016-12-21 11:41:23.674057: [warn]     /Users/xxx/code/quorum/constellation/.stack-work/install/x86_64-osx/lts-7.5/8.0.1/lib/x86_64-osx-ghc-8.0.1/argon2-1.2.0-GzhheWYu2saHa29BPiZeRb/libHSargon2-1.2.0-GzhheWYu2saHa29BPiZeRb.a(blake2b.o)
@(Stack/Build/Execute.hs:1013:67)
2016-12-21 11:41:23.674138: [warn] duplicate symbol _blake2b_update in:
@(Stack/Build/Execute.hs:1013:67)
2016-12-21 11:41:23.674199: [warn]     /Users/xxx/.stack/snapshots/x86_64-osx/lts-7.5/8.0.1/lib/x86_64-osx-ghc-8.0.1/cryptonite-0.19-G9PYO4oOEqhDTta2u9rAaU/libHScryptonite-0.19-G9PYO4oOEqhDTta2u9rAaU.a(blake2b.o)
@(Stack/Build/Execute.hs:1013:67)
2016-12-21 11:41:23.674261: [warn]     /Users/xxx/code/quorum/constellation/.stack-work/install/x86_64-osx/lts-7.5/8.0.1/lib/x86_64-osx-ghc-8.0.1/argon2-1.2.0-GzhheWYu2saHa29BPiZeRb/libHSargon2-1.2.0-GzhheWYu2saHa29BPiZeRb.a(blake2b.o)
@(Stack/Build/Execute.hs:1013:67)
2016-12-21 11:41:23.674339: [warn] duplicate symbol _blake2b in:
@(Stack/Build/Execute.hs:1013:67)
2016-12-21 11:41:23.674469: [warn]     /Users/xxx/.stack/snapshots/x86_64-osx/lts-7.5/8.0.1/lib/x86_64-osx-ghc-8.0.1/cryptonite-0.19-G9PYO4oOEqhDTta2u9rAaU/libHScryptonite-0.19-G9PYO4oOEqhDTta2u9rAaU.a(blake2b.o)
@(Stack/Build/Execute.hs:1013:67)
2016-12-21 11:41:23.675459: [warn]     /Users/xxx/code/quorum/constellation/.stack-work/install/x86_64-osx/lts-7.5/8.0.1/lib/x86_64-osx-ghc-8.0.1/argon2-1.2.0-GzhheWYu2saHa29BPiZeRb/libHSargon2-1.2.0-GzhheWYu2saHa29BPiZeRb.a(blake2b.o)
@(Stack/Build/Execute.hs:1013:67)
2016-12-21 11:41:23.762342: [warn] ld: 6 duplicate symbols for architecture x86_64
@(Stack/Build/Execute.hs:1013:67)
2016-12-21 11:41:23.777064: [warn] clang: error: linker command failed with exit code 1 (use -v to see invocation)
@(Stack/Build/Execute.hs:1013:67)
2016-12-21 11:41:23.778531: [warn] `gcc' failed in phase `Linker'. (Exit code: 1)
@(Stack/Build/Execute.hs:1013:67)
2016-12-21 11:41:23.814913: [debug] Start: getPackageFiles /Users/xxx/code/quorum/constellation/constellation.cabal
@(Stack/Package.hs:250:21)
2016-12-21 11:41:23.885131: [debug] Finished in 70ms: getPackageFiles /Users/xxx/code/quorum/constellation/constellation.cabal
@(Stack/Package.hs:250:21)
2016-12-21 11:41:23.893998: [debug] Encoding /Users/xxx/code/quorum/constellation/.stack-work/dist/x86_64-osx/Cabal-1.24.0.0/stack-build-cache
@(Data/Store/VersionTagged.hs:51:5)
2016-12-21 11:41:23.896432: [debug] Finished writing /Users/xxx/code/quorum/constellation/.stack-work/dist/x86_64-osx/Cabal-1.24.0.0/stack-build-cache
@(Data/Store/VersionTagged.hs:55:5)

--  While building package constellation-0.1.0.0 using:
      /Users/xxx/.stack/setup-exe-cache/x86_64-osx/Cabal-simple_mPHDZzAJ_1.24.0.0_ghc-8.0.1 --builddir=.stack-work/dist/x86_64-osx/Cabal-1.24.0.0 build lib:constellation exe:constellation-enclave-keygen exe:constellation-node --ghc-options " -ddump-hi -ddump-to-file"
    Process exited with code: ExitFailure 1
@patrickmn
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This is related to #1 which we would be able to resolve soon. Thanks for your patience.

@patrickmn
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Resolved by #8

@hvr
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hvr commented Mar 25, 2018

Fyi, this was resolved in argon2's latest release at https://hackage.haskell.org/package/argon2-1.3.0.0 which can be considered actively maintained again effective immediately.

@vmadan2 vmadan2 mentioned this issue May 3, 2018
Closed
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@patrickmn @hvr @conor10