Copyright update

DerrickWood · Jun 6, 2023 · 383ef55 · 383ef55
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diff --git a/LICENSE b/LICENSE
@@ -1,6 +1,6 @@
 The MIT License (MIT)
 
-Copyright (c) 2017-2021 Derrick Wood
+Copyright (c) 2017-2023 Derrick Wood
 
 Permission is hereby granted, free of charge, to any person obtaining a copy
 of this software and associated documentation files (the "Software"), to deal

diff --git a/install_kraken2.sh b/install_kraken2.sh
@@ -1,6 +1,6 @@
 #!/bin/bash
 
-# Copyright 2013-2021, Derrick Wood <[email protected]>
+# Copyright 2013-2023, Derrick Wood <[email protected]>
 #
 # This file is part of the Kraken 2 taxonomic sequence classification system.
 

diff --git a/scripts/16S_gg_installation.sh b/scripts/16S_gg_installation.sh
@@ -1,6 +1,6 @@
 #!/bin/bash
 
-# Copyright 2013-2021, Derrick Wood <[email protected]>
+# Copyright 2013-2023, Derrick Wood <[email protected]>
 #
 # This file is part of the Kraken 2 taxonomic sequence classification system.
 

diff --git a/scripts/16S_rdp_installation.sh b/scripts/16S_rdp_installation.sh
@@ -1,6 +1,6 @@
 #!/bin/bash
 
-# Copyright 2013-2021, Derrick Wood <[email protected]>
+# Copyright 2013-2023, Derrick Wood <[email protected]>
 #
 # This file is part of the Kraken 2 taxonomic sequence classification system.
 

diff --git a/scripts/16S_silva_installation.sh b/scripts/16S_silva_installation.sh
@@ -1,6 +1,6 @@
 #!/bin/bash
 
-# Copyright 2013-2021, Derrick Wood <[email protected]>
+# Copyright 2013-2023, Derrick Wood <[email protected]>
 #
 # This file is part of the Kraken 2 taxonomic sequence classification system.
 

diff --git a/scripts/add_to_library.sh b/scripts/add_to_library.sh
@@ -1,6 +1,6 @@
 #!/bin/bash
 
-# Copyright 2013-2021, Derrick Wood <[email protected]>
+# Copyright 2013-2023, Derrick Wood <[email protected]>
 #
 # This file is part of the Kraken 2 taxonomic sequence classification system.
 

diff --git a/scripts/build_gg_taxonomy.pl b/scripts/build_gg_taxonomy.pl
@@ -1,6 +1,6 @@
 #!/usr/bin/env perl
 
-# Copyright 2013-2021, Derrick Wood <[email protected]>
+# Copyright 2013-2023, Derrick Wood <[email protected]>
 #
 # This file is part of the Kraken 2 taxonomic sequence classification system.
 

diff --git a/scripts/build_kraken2_db.sh b/scripts/build_kraken2_db.sh
@@ -1,6 +1,6 @@
 #!/bin/bash
 
-# Copyright 2013-2021, Derrick Wood <[email protected]>
+# Copyright 2013-2023, Derrick Wood <[email protected]>
 #
 # This file is part of the Kraken 2 taxonomic sequence classification system.
 

diff --git a/scripts/build_rdp_taxonomy.pl b/scripts/build_rdp_taxonomy.pl
@@ -1,6 +1,6 @@
 #!/usr/bin/env perl
 
-# Copyright 2013-2021, Derrick Wood <[email protected]>
+# Copyright 2013-2023, Derrick Wood <[email protected]>
 #
 # This file is part of the Kraken 2 taxonomic sequence classification system.
 

diff --git a/scripts/build_silva_taxonomy.pl b/scripts/build_silva_taxonomy.pl
@@ -1,6 +1,6 @@
 #!/usr/bin/env perl
 
-# Copyright 2013-2021, Derrick Wood <[email protected]>
+# Copyright 2013-2023, Derrick Wood <[email protected]>
 #
 # This file is part of the Kraken 2 taxonomic sequence classification system.
 

diff --git a/scripts/clean_db.sh b/scripts/clean_db.sh
@@ -1,6 +1,6 @@
 #!/bin/bash
 
-# Copyright 2013-2021, Derrick Wood <[email protected]>
+# Copyright 2013-2023, Derrick Wood <[email protected]>
 #
 # This file is part of the Kraken 2 taxonomic sequence classification system.
 

diff --git a/scripts/cp_into_tempfile.pl b/scripts/cp_into_tempfile.pl
@@ -1,6 +1,6 @@
 #!/usr/bin/env perl
 
-# Copyright 2013-2021, Derrick Wood <[email protected]>
+# Copyright 2013-2023, Derrick Wood <[email protected]>
 #
 # This file is part of the Kraken 2 taxonomic sequence classification system.
 

diff --git a/scripts/download_genomic_library.sh b/scripts/download_genomic_library.sh
@@ -1,6 +1,6 @@
 #!/bin/bash
 
-# Copyright 2013-2021, Derrick Wood <[email protected]>
+# Copyright 2013-2023, Derrick Wood <[email protected]>
 #
 # This file is part of the Kraken 2 taxonomic sequence classification system.
 

diff --git a/scripts/download_taxonomy.sh b/scripts/download_taxonomy.sh
@@ -1,6 +1,6 @@
 #!/bin/bash
 
-# Copyright 2013-2021, Derrick Wood <[email protected]>
+# Copyright 2013-2023, Derrick Wood <[email protected]>
 #
 # This file is part of the Kraken 2 taxonomic sequence classification system.
 

diff --git a/scripts/kraken2 b/scripts/kraken2
@@ -1,6 +1,6 @@
 #!/usr/bin/env perl
 
-# Copyright 2013-2021, Derrick Wood <[email protected]>
+# Copyright 2013-2023, Derrick Wood <[email protected]>
 #
 # This file is part of the Kraken 2 taxonomic sequence classification system.
 
@@ -231,7 +231,7 @@ sub display_help {
 
 sub display_version {
   print "Kraken version #####=VERSION=#####\n";
-  print "Copyright 2013-2021, Derrick Wood (dwood\@cs.jhu.edu)\n";
+  print "Copyright 2013-2023, Derrick Wood (dwood\@cs.jhu.edu)\n";
   exit 0;
 }
 

diff --git a/scripts/kraken2-build b/scripts/kraken2-build
@@ -1,6 +1,6 @@
 #!/usr/bin/env perl
 
-# Copyright 2013-2021, Derrick Wood <[email protected]>
+# Copyright 2013-2023, Derrick Wood <[email protected]>
 #
 # This file is part of the Kraken 2 taxonomic sequence classification system.
 
@@ -282,7 +282,7 @@ sub display_help {
 
 sub display_version {
   print "Kraken version #####=VERSION=#####\n";
-  print "Copyright 2013-2021, Derrick Wood (dwood\@cs.jhu.edu)\n";
+  print "Copyright 2013-2023, Derrick Wood (dwood\@cs.jhu.edu)\n";
   exit 0;
 }
 

diff --git a/scripts/kraken2-inspect b/scripts/kraken2-inspect
@@ -1,6 +1,6 @@
 #!/usr/bin/env perl
 
-# Copyright 2013-2021, Derrick Wood <[email protected]>
+# Copyright 2013-2023, Derrick Wood <[email protected]>
 #
 # This file is part of the Kraken 2 taxonomic sequence classification system.
 
@@ -105,6 +105,6 @@ sub display_help {
 
 sub display_version {
   print "Kraken version #####=VERSION=#####\n";
-  print "Copyright 2013-2021, Derrick Wood (dwood\@cs.jhu.edu)\n";
+  print "Copyright 2013-2023, Derrick Wood (dwood\@cs.jhu.edu)\n";
   exit 0;
 }
diff --git a/scripts/kraken2lib.pm b/scripts/kraken2lib.pm
@@ -1,6 +1,6 @@
 package kraken2lib;
 
-# Copyright 2013-2021, Derrick Wood <[email protected]>
+# Copyright 2013-2023, Derrick Wood <[email protected]>
 #
 # This file is part of the Kraken 2 taxonomic sequence classification system.
 

diff --git a/scripts/lookup_accession_numbers.pl b/scripts/lookup_accession_numbers.pl
@@ -1,6 +1,6 @@
 #!/usr/bin/env perl
 
-# Copyright 2013-2021, Derrick Wood <[email protected]>
+# Copyright 2013-2023, Derrick Wood <[email protected]>
 #
 # This file is part of the Kraken 2 taxonomic sequence classification system.
 

diff --git a/scripts/make_seqid2taxid_map.pl b/scripts/make_seqid2taxid_map.pl
@@ -1,6 +1,6 @@
 #!/usr/bin/env perl
 
-# Copyright 2013-2021, Derrick Wood <[email protected]>
+# Copyright 2013-2023, Derrick Wood <[email protected]>
 #
 # This file is part of the Kraken 2 taxonomic sequence classification system.
 

diff --git a/scripts/mask_low_complexity.sh b/scripts/mask_low_complexity.sh
@@ -1,6 +1,6 @@
 #!/bin/bash
 
-# Copyright 2013-2021, Derrick Wood <[email protected]>
+# Copyright 2013-2023, Derrick Wood <[email protected]>
 #
 # This file is part of the Kraken 2 taxonomic sequence classification system.
 

diff --git a/scripts/rsync_from_ncbi.pl b/scripts/rsync_from_ncbi.pl
@@ -1,6 +1,6 @@
 #!/usr/bin/env perl
 
-# Copyright 2013-2021, Derrick Wood <[email protected]>
+# Copyright 2013-2023, Derrick Wood <[email protected]>
 #
 # This file is part of the Kraken 2 taxonomic sequence classification system.
 

diff --git a/scripts/scan_fasta_file.pl b/scripts/scan_fasta_file.pl
@@ -1,6 +1,6 @@
 #!/usr/bin/env perl
 
-# Copyright 2013-2021, Derrick Wood <[email protected]>
+# Copyright 2013-2023, Derrick Wood <[email protected]>
 #
 # This file is part of the Kraken 2 taxonomic sequence classification system.
 

diff --git a/scripts/standard_installation.sh b/scripts/standard_installation.sh
@@ -1,6 +1,6 @@
 #!/bin/bash
 
-# Copyright 2013-2021, Derrick Wood <[email protected]>
+# Copyright 2013-2023, Derrick Wood <[email protected]>
 #
 # This file is part of the Kraken 2 taxonomic sequence classification system.
 

diff --git a/src/aa_translate.cc b/src/aa_translate.cc
@@ -1,5 +1,5 @@
 /*
- * Copyright 2013-2021, Derrick Wood <[email protected]>
+ * Copyright 2013-2023, Derrick Wood <[email protected]>
  *
  * This file is part of the Kraken 2 taxonomic sequence classification system.
  */

diff --git a/src/aa_translate.h b/src/aa_translate.h
@@ -1,5 +1,5 @@
 /*
- * Copyright 2013-2021, Derrick Wood <[email protected]>
+ * Copyright 2013-2023, Derrick Wood <[email protected]>
  *
  * This file is part of the Kraken 2 taxonomic sequence classification system.
  */

diff --git a/src/build_db.cc b/src/build_db.cc
@@ -1,5 +1,5 @@
 /*
- * Copyright 2013-2021, Derrick Wood <[email protected]>
+ * Copyright 2013-2023, Derrick Wood <[email protected]>
  *
  * This file is part of the Kraken 2 taxonomic sequence classification system.
  */

diff --git a/src/classify.cc b/src/classify.cc
@@ -1,5 +1,5 @@
 /*
- * Copyright 2013-2021, Derrick Wood <[email protected]>
+ * Copyright 2013-2023, Derrick Wood <[email protected]>
  *
  * This file is part of the Kraken 2 taxonomic sequence classification system.
  */

diff --git a/src/compact_hash.cc b/src/compact_hash.cc
@@ -1,5 +1,5 @@
 /*
- * Copyright 2013-2021, Derrick Wood <[email protected]>
+ * Copyright 2013-2023, Derrick Wood <[email protected]>
  *
  * This file is part of the Kraken 2 taxonomic sequence classification system.
  */

diff --git a/src/compact_hash.h b/src/compact_hash.h
@@ -1,5 +1,5 @@
 /*
- * Copyright 2013-2021, Derrick Wood <[email protected]>
+ * Copyright 2013-2023, Derrick Wood <[email protected]>
  *
  * This file is part of the Kraken 2 taxonomic sequence classification system.
  */

diff --git a/src/dump_table.cc b/src/dump_table.cc
@@ -1,5 +1,5 @@
 /*
- * Copyright 2013-2021, Derrick Wood <[email protected]>
+ * Copyright 2013-2023, Derrick Wood <[email protected]>
  *
  * This file is part of the Kraken 2 taxonomic sequence classification system.
  */

diff --git a/src/estimate_capacity.cc b/src/estimate_capacity.cc
@@ -1,5 +1,5 @@
 /*
- * Copyright 2013-2021, Derrick Wood <[email protected]>
+ * Copyright 2013-2023, Derrick Wood <[email protected]>
  *
  * This file is part of the Kraken 2 taxonomic sequence classification system.
  */

diff --git a/src/kraken2_data.h b/src/kraken2_data.h
@@ -1,5 +1,5 @@
 /*
- * Copyright 2013-2021, Derrick Wood <[email protected]>
+ * Copyright 2013-2023, Derrick Wood <[email protected]>
  *
  * This file is part of the Kraken 2 taxonomic sequence classification system.
  */

diff --git a/src/kv_store.h b/src/kv_store.h
@@ -1,5 +1,5 @@
 /*
- * Copyright 2013-2021, Derrick Wood <[email protected]>
+ * Copyright 2013-2023, Derrick Wood <[email protected]>
  *
  * This file is part of the Kraken 2 taxonomic sequence classification system.
  */

diff --git a/src/lookup_accession_numbers.cc b/src/lookup_accession_numbers.cc
@@ -1,5 +1,5 @@
 /*
- * Copyright 2013-2021, Derrick Wood <[email protected]>
+ * Copyright 2013-2023, Derrick Wood <[email protected]>
  *
  * This file is part of the Kraken 2 taxonomic sequence classification system.
  */

diff --git a/src/mmap_file.cc b/src/mmap_file.cc
@@ -1,5 +1,5 @@
 /*
- * Copyright 2013-2021, Derrick Wood <[email protected]>
+ * Copyright 2013-2023, Derrick Wood <[email protected]>
  *
  * This file is part of the Kraken 2 taxonomic sequence classification system.
  */

diff --git a/src/mmap_file.h b/src/mmap_file.h
@@ -1,5 +1,5 @@
 /*
- * Copyright 2013-2021, Derrick Wood <[email protected]>
+ * Copyright 2013-2023, Derrick Wood <[email protected]>
  *
  * This file is part of the Kraken 2 taxonomic sequence classification system.
  */

diff --git a/src/mmscanner.cc b/src/mmscanner.cc
@@ -1,5 +1,5 @@
 /*
- * Copyright 2013-2021, Derrick Wood <[email protected]>
+ * Copyright 2013-2023, Derrick Wood <[email protected]>
  *
  * This file is part of the Kraken 2 taxonomic sequence classification system.
  */

diff --git a/src/mmscanner.h b/src/mmscanner.h
@@ -1,5 +1,5 @@
 /*
- * Copyright 2013-2021, Derrick Wood <[email protected]>
+ * Copyright 2013-2023, Derrick Wood <[email protected]>
  *
  * This file is part of the Kraken 2 taxonomic sequence classification system.
  */

diff --git a/src/omp_hack.cc b/src/omp_hack.cc
@@ -1,5 +1,5 @@
 /*
- * Copyright 2013-2021, Derrick Wood <[email protected]>
+ * Copyright 2013-2023, Derrick Wood <[email protected]>
  *
  * This file is part of the Kraken 2 taxonomic sequence classification system.
  */

diff --git a/src/omp_hack.h b/src/omp_hack.h
@@ -1,5 +1,5 @@
 /*
- * Copyright 2013-2021, Derrick Wood <[email protected]>
+ * Copyright 2013-2023, Derrick Wood <[email protected]>
  *
  * This file is part of the Kraken 2 taxonomic sequence classification system.
  */

diff --git a/src/reports.cc b/src/reports.cc
@@ -1,5 +1,5 @@
 /*
- * Copyright 2013-2021, Derrick Wood <[email protected]>
+ * Copyright 2013-2023, Derrick Wood <[email protected]>
  *
  * This file is part of the Kraken 2 taxonomic sequence classification system.
  */

diff --git a/src/reports.h b/src/reports.h
@@ -1,5 +1,5 @@
 /*
- * Copyright 2013-2021, Derrick Wood <[email protected]>
+ * Copyright 2013-2023, Derrick Wood <[email protected]>
  *
  * This file is part of the Kraken 2 taxonomic sequence classification system.
  */

diff --git a/src/seqreader.cc b/src/seqreader.cc
@@ -1,5 +1,5 @@
 /*
- * Copyright 2013-2021, Derrick Wood <[email protected]>
+ * Copyright 2013-2023, Derrick Wood <[email protected]>
  *
  * This file is part of the Kraken 2 taxonomic sequence classification system.
  */

diff --git a/src/seqreader.h b/src/seqreader.h
@@ -1,5 +1,5 @@
 /*
- * Copyright 2013-2021, Derrick Wood <[email protected]>
+ * Copyright 2013-2023, Derrick Wood <[email protected]>
  *
  * This file is part of the Kraken 2 taxonomic sequence classification system.
  */

diff --git a/src/taxonomy.cc b/src/taxonomy.cc
@@ -1,5 +1,5 @@
 /*
- * Copyright 2013-2021, Derrick Wood <[email protected]>
+ * Copyright 2013-2023, Derrick Wood <[email protected]>
  *
  * This file is part of the Kraken 2 taxonomic sequence classification system.
  */

diff --git a/src/taxonomy.h b/src/taxonomy.h
@@ -1,5 +1,5 @@
 /*
- * Copyright 2013-2021, Derrick Wood <[email protected]>
+ * Copyright 2013-2023, Derrick Wood <[email protected]>
  *
  * This file is part of the Kraken 2 taxonomic sequence classification system.
  */

diff --git a/src/utilities.cc b/src/utilities.cc
@@ -1,5 +1,5 @@
 /*
- * Copyright 2013-2021, Derrick Wood <[email protected]>
+ * Copyright 2013-2023, Derrick Wood <[email protected]>
  *
  * This file is part of the Kraken 2 taxonomic sequence classification system.
  */

diff --git a/src/utilities.h b/src/utilities.h
@@ -1,5 +1,5 @@
 /*
- * Copyright 2013-2021, Derrick Wood <[email protected]>
+ * Copyright 2013-2023, Derrick Wood <[email protected]>
  *
  * This file is part of the Kraken 2 taxonomic sequence classification system.
  */