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Update cross reference to ICDO for DOID:0050771 #1423

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ACharbonneau opened this issue Jan 30, 2025 · 1 comment
Closed

Update cross reference to ICDO for DOID:0050771 #1423

ACharbonneau opened this issue Jan 30, 2025 · 1 comment
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@ACharbonneau
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Is your request related to a specific disease? Please describe.

I think the issue is just a typo. In the current src files on github (here I'm quoting from doid-merged.obo, but the info is the same in all the src files I've checked) both DOID:0050771 and DOID:0080347 are cross mapped to ICDO 8700/3. In the ICDO standard, the /# describes the severity of the cancer with /0 being benign and /3 being metastatic/malignant.

Describe the proposed change(s)
So, based on the definitions in doid-merged.obo, DOID:0050771 should be cross mapped to 8700/0 and DOID:0080347 should be cross mapped to 8700/3. I've pasted the current relevant obo text below.

id: DOID:0050771
name: pheochromocytoma
def: "An endocrine organ benign neoplasm that arises within the adrenal medulla, releasing epinephrines and norepinephrines hormones that cause either episodic or persistent high blood pressure." [url:https\://en.wikipedia.org/wiki/Pheochromocytoma, url:https\://rarediseases.info.nih.gov/diseases/7385/pheochromocytoma, url:https\://www.mayoclinic.org/diseases-conditions/pheochromocytoma/symptoms-causes/syc-20355367, url:https\://www.omim.org/entry/171300]
subset: DO_cancer_slim
subset: DO_rare_slim
synonym: "phaeochromocytoma" EXACT []
xref: GARD:7385
xref: ICDO:8700/3
xref: MESH:D010673
xref: MIM:171300
is_a: DOID:0060089 ! endocrine organ benign neoplasm
created_by: lschriml
creation_date: 2013-02-21T11:40:58Z
id: DOID:0080347
name: malignant pheochromocytoma
def: "An adrenal medulla cancer that arises within the adrenal medulla, releasing epinephrines and norepinephrines hormones." [url:https\://www.omim.org/entry/171300]
subset: DO_cancer_slim
synonym: "Pheochromocytoma, malignant" EXACT []
xref: ICDO:8700/3
is_a: DOID:5719 ! adrenal medulla cancer

References
ICD0 3rd ed relevant info starts on page 8:

Image

my orcid: https://orcid.org/0000-0001-7376-7702

@lschriml lschriml self-assigned this Feb 3, 2025
@lschriml
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lschriml commented Feb 3, 2025

Agreed, this has been fixed.
Thank you for pointing out this error.

Cheers,
Lynn

@lschriml lschriml closed this as completed Feb 3, 2025
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