Rebuilding on Lassen

[bzdjordje]

Description

An old executable has been running noticeably slower on Lassen, have been trying to rebuild it. However the recompiled executable gives a runtime error I do not recognize, files attached here.

System information

• Operating system (name and version):
  • Linux: e.g., Ubuntu 22.04 LTS
  • macOS: e.g., macOS Monterey 12.4
  • Windows: e.g., Windows 11 Pro
• Version of WarpX: e.g., latest, 24.10, etc.
• Installation method:
  • Conda
  • Spack
  • PyPI
  • Brew
  • From source with CMake
  • Module system on an HPC cluster
• Other dependencies: yes/no, describe
• Computational resources:
  • CPU
  • GPU: e.g., NVIDIA, AMD, etc.

If you encountered the issue on an HPC cluster, please check our HPC documentation to see if your HPC cluster is already supported.

If you encountered the issue installing from source with CMake, please provide the output of the following steps:

1. buildsystem generation: output of cmake --fresh -S . -B build (include your specific build options, e.g., -DWarpX_DIMS=3)
2. project build: output of cmake --build build (include your specific build options, e.g., -j 4)

If applicable, please add any additional information about your software environment:

• CMake: e.g., 3.29.0
• C++ compiler: e.g., GNU 11.3 with NVCC 12.0.76
• Python: e.g., CPython 3.12
• MPI: e.g., OpenMPI 4.1.1
• FFTW: e.g., 3.3.10
• HDF5: e.g., 1.14.0
• ADIOS2: e.g., 2.10.0
• Other dependencies: yes/no, describe

Additional information

/.bashrc: line 52: [: ==: unary operator expected
2: 1: errno 14 pid 56498
2: 1: warpx.rz: /__SMPI_build_dir_______________________________________/ibmsrc/pami/ibm-pami/buildtools/pami_build_port/../pami/components/devices/shmem/shaddr/CMAShaddr.h:164: size_t PAMI::Device::Shmem::CMAShaddr::read_impl(PAMI::Memregion*, size_t, PAMI::Memregion*, size_t, size_t, bool*): Assertion `cbytes > 0' failed.
2: 1: SIGABRT

warpx_run.zip

[RemiLehe]

OK, thanks a lot for posting these files.
From these files, it seems that there is a runtime error in the first call to FillBoundary_finish:

2: 1: warpx.rz: /__SMPI_build_dir_______________________________________/ibmsrc/pami/ibm-pami/buildtools/pami_build_port/../pami/components/devices/shmem/shaddr/CMAShaddr.h:164: 
size_t PAMI::Device::Shmem::CMAShaddr::read_impl(PAMI::Memregion*, size_t, PAMI::Memregion*, size_t, size_t, bool*): Assertion `cbytes > 0' failed.