From 274e1e1775b67da9230c3d51a5c00621e7c19454 Mon Sep 17 00:00:00 2001 From: clairbarrass Date: Mon, 26 Feb 2024 21:59:41 +0000 Subject: [PATCH] Update index.md --- docs/e1000-migration/index.md | 65 +---------------------------------- 1 file changed, 1 insertion(+), 64 deletions(-) diff --git a/docs/e1000-migration/index.md b/docs/e1000-migration/index.md index 6cec834d..7392acca 100644 --- a/docs/e1000-migration/index.md +++ b/docs/e1000-migration/index.md @@ -19,7 +19,7 @@ It covers: This change should be transparent to users and the TOTP and ssh keys should work as previously If users do experience issues then please reset your TOTP and ssh keys and try to reconnect. -If issues persist, then please contact the service desk +If issues persist, then please [contact the service desk](mailto:support@cirrus.ac.uk) ## New storage -> Data migration @@ -50,59 +50,50 @@ We are taking the opportunity to update modules and remove outdated modules. Package/module -Owner Advice for users Documentation? Comments altair-hwsolvers/13.0.213 -William Please contact the service desk if you wish to use Altair Hyperworks.

altair-hwsolvers/14.0.210 -William Please contact the service desk if you wish to use Altair Hyperworks.

ansys/18.0 -William Please contact the service desk if you wish to use ANSYS Fluent.

ansys/19.0 -William Please contact the service desk if you wish to use ANSYS Fluent.

autoconf/2.69

-MichaelB Please use autoconf/2.71 n/a

bison/3.6.4

-Sebastien Please use bison/3.8.2

boost/1.67.0

-Xu Please use boost/1.84.0 n/a

boost/1.73.0

-Xu Please use boost/1.84.0

@@ -110,14 +101,12 @@ We are taking the opportunity to update modules and remove outdated modules.

cmake/3.17.3

cmake/3.22.1

-Kevin Please use cmake/3.25.2

CUnit/2.1.3

-William Please contact the service desk if you wish to use CUnit.

@@ -125,21 +114,18 @@ We are taking the opportunity to update modules and remove outdated modules.

dolfin/2019.1.0-intel-mpi

dolfin/2019.1.0-mpt

-Sebastien Dolfin is no longer supported and will not be replaced.
See also RFC 158

eclipse/2020-09

-William Please contact the service desk if you wish to use Eclipse.

expat/2.2.9

-MichaelB Please use expat/2.6.0 n/a
@@ -147,7 +133,6 @@ We are taking the opportunity to update modules and remove outdated modules.

fenics/2019.1.0-intel-mpi

fenics/2019.1.0-mpt

-Sebastien Fenics is no longer supported and will not be replaced.
See also RFC158 @@ -160,7 +145,6 @@ We are taking the opportunity to update modules and remove outdated modules.

fftw/3.3.9-impi19-gcc8  

fftw/3.3.10-intel19-mpt225   

fftw/3.3.10-ompi4-cuda116-gcc8

-Xu

Please use one of the following

fftw/3.3.10-gcc10.2-mpt2.25

@@ -179,35 +163,30 @@ We are taking the opportunity to update modules and remove outdated modules.

flacs-cfd/21.2

flacs-cfd/22.1


-Kevin Please contact the helpdesk if you wish to use FLACS. REMOVE documentation (but not yet)

forge/22.1.3

-Kevin Please use forge/23.1.1 UPDATE REQUIRED PENDING

gcc/6.2.0

-William Please use gcc/8.2.0 or later

gcc/6.3.0

-William Please use gcc/8.2.0 or later

gcc/12.2.0-offload

-William Please use gcc/12.3.0-offload

@@ -216,14 +195,12 @@ We are taking the opportunity to update modules and remove outdated modules.

gdal/2.1.2-gcc

gdal/2.1.2-intel 

gdal/2.4.4-gcc

-MichaelB Please use gcc/3.6.2-gcc n/a

git/2.21.0

-
Please use git/2.37.3
No change: automatically loads git/2.37.3 via epcc/utils @@ -232,21 +209,18 @@ We are taking the opportunity to update modules and remove outdated modules.

gmp/6.2.0-intel 

gmp/6.2.1-mpt

gmp/6.3.0-mpt

-Eleanor Please use gmp/6.3.0-gcc or gmp/6.3.0-intel 

gnu-parallel/20200522-gcc6

-MichaelB Please use gnu-parallel/20240122-gcc10 TODO

gromacs/2022.1
gromacs/2022.1-gpu
gromacs/2022.3-gpu

-RuiA

Please use one of:
gromacs/2023.4
gromacs/2023.4-gpu


@@ -254,35 +228,30 @@ We are taking the opportunity to update modules and remove outdated modules.

hdf5parallel/1.10.4-intel18-impi18

-William Please use hdf5parallel/1.14.3-intel20-impi20

hdf5parallel/1.10.6-gcc6-mpt225

-William Please use hdf5parallel/1.14.3-gcc10-mpt225

hdf5parallel/1.10.6-intel18-mpt225

-William Please use hdf5parallel/1.14.3-intel20-mpt225

hdf5parallel/1.10.6-intel19-mpt225

-William Please use hdf5parallel/1.14.3-intel20-mpt225

hdf5serial/1.10.6-intel18

-William Please use hdf5serial/1.14.3-intel20

@@ -291,35 +260,30 @@ We are taking the opportunity to update modules and remove outdated modules.

horovod/0.25.0

horovod/0.25.0-gpu

horovod/0.26.1-gpu

-MichaelB Please use one of the pytorch or tensorflow modules TODO

htop/3.1.2 

-Installed by AJ Please use htop/3.2.1 

intel 18.0 compilers etc

-Kevin Please use Intel 19.5 or later; or oneAPI ADD ONEAPI information Should be moving to oneAPI

intel 19.0 compilers etc

-Kevin Please use Intel 19.5 or later

lammps/23Jun2022_intel19_mpt
lammps/8Feb2023-gcc8-impi
lammps/23Sep2023-gcc8-impi
lammps/8Feb2023-gcc8-impi-cuda118
lammps/23Sep2023-gcc8-impi-cuda118

-RuiA

Please use one of:

lammps/15Dec2023-gcc10.2-impi20.4
lammps-gpu/15Dec2023-gcc10.2-impi20.4-cuda11.8

@@ -328,67 +292,57 @@ We are taking the opportunity to update modules and remove outdated modules.

libxkbcommon/1.0.1

-William Please contact the service desk if you wish to use libxkbcommon.

libnsl/1.3.0 

-Eleanor Please contact the helpdesk if you wish to use libnsl.
Dependancy for STARCCM+.

libpng/1.6.30

-(Xu) This is no longer supported as the central module.

libtirpc/1.2.6

-Eleanor Please contact the helpdesk if you wish to use libtirpc.
Dependancy for STARCCM+.

libtool/2.4.6

-Sebastien Please use libtool/2.4.7

nco/4.9.3 -William Please use nco/5.1.9

nco/4.9.7 -William Please use nco/5.1.9

ncview/2.1.7 -William Please use ncview/2.1.10

netcdf-parallel/4.6.2-intel18-impi18

-William Please use netcdf-parallel/4.9.2-intel20-impi20

netcdf-parallel/4.6.2-intel19-mpt225

-William Please use netcdf-parallel/4.9.2-intel20-mpt225

@@ -398,7 +352,6 @@ We are taking the opportunity to update modules and remove outdated modules.

nvidia/cudnn/8.2.1-cuda-11.6

nvidia/cudnn/8.9.4-cuda-11.6

nvidia/cudnn/8.9.7-cuda-11.6

-MichaelB

Please use one of the following

nvidia/cudnn/8.6.0-cuda-11.6

@@ -408,35 +361,30 @@ We are taking the opportunity to update modules and remove outdated modules.

nvidia/nvhpc/22.11-no-gcc

-Kevin Use nvidia/nvhpc/22.11

nvidia/tensorrt/7.2.3.4

-MichaelB Please use nvidia/tensorrt/8.4.3.1-u2 TODO

openfoam/v8.0

-Kevin Please consider a later version, e.g., v10.0

openfoam/v9.0

-Kevin Please consider a later version, e.g, v11.0

openfoam/v2006

-Kevin Please consider a later version, e.g., v2306

@@ -451,7 +399,6 @@ We are taking the opportunity to update modules and remove outdated modules.

openmpi/4.1.5

openmpi/4.1.5-cuda-11.6


-MichaelB

Please use one of the following

openmpi/4.1.6

@@ -466,14 +413,12 @@ We are taking the opportunity to update modules and remove outdated modules.

petsc/3.13.2-intel-mpi-18

petsc/3.13.2-mpt

-Kevin Please contact the helpdesk if you require a more recent version of PETSc.

pyfr/1.14.0-gpu

-MichaelB Please use pyfr/1.15.0-gpu TODO
@@ -481,7 +426,6 @@ We are taking the opportunity to update modules and remove outdated modules.

pytorch/1.12.1

pytorch/1.12.1-gpu

-MichaelB

Please use one of the following

pytorch/1.13.1

@@ -493,14 +437,12 @@ We are taking the opportunity to update modules and remove outdated modules.

quantum-espresso/6.5-intel-19

-Eleanor Please use QE/6.5-intel-20.4

specfem3d

-Juan Please contact the helpdesk if you wish to use SPECFEM3D

@@ -512,7 +454,6 @@ We are taking the opportunity to update modules and remove outdated modules.

starccm+/15.04.010-R8 → 2020.2.1-R8 

starccm+/15.06.008-R8 → 2020.3.1-R8

starccm+/16.02.009 → 2021.1.1

-Eleanor Please contact the helpdesk if you wish to use STAR-CCM+

@@ -521,7 +462,6 @@ We are taking the opportunity to update modules and remove outdated modules.

tensorflow/2.9.1-gpu

tensorflow/2.10.0

tensorflow/2.11.0-gpu

-MichaelB

Please use one of the following

tensorflow/2.15.0

@@ -534,7 +474,6 @@ We are taking the opportunity to update modules and remove outdated modules.

ucx/1.9.0

ucx/1.9.0-cuda-11.6

ucx/1.9.0-cuda-11.8

-MichaelB

Please use one of the following

ucx/1.15.0

@@ -547,12 +486,10 @@ We are taking the opportunity to update modules and remove outdated modules.

vasp-5.4.4-intel19-mpt220



-
NO VASP5 at all?

zlib/1.2.11

-Kevin Please use zlib/1.3.1
nb. /usr/lib64 has 1.2.11