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Genbank tm shorthand unknown #94

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a-lewis-acid opened this issue Jan 7, 2025 · 1 comment
Open

Genbank tm shorthand unknown #94

a-lewis-acid opened this issue Jan 7, 2025 · 1 comment

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@a-lewis-acid
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When I submit an annotated Genbank file to the API with an annotation to constrain the melting temperature of a region it returns "Program error: Unknown specification tm".

E.g. @tm(50-55C)

Is this a bug or is the tm specification meant to be used in a different way to that described in the API notes?

@veghp
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veghp commented Jan 8, 2025

Thank you for bringing attention to this, I managed to reproduce this issue (probably EnforceMeltingTemperature is missing from https://github.com/Edinburgh-Genome-Foundry/DnaChisel/blob/master/dnachisel/builtin_specifications/__init__.py#L58 or along those lines). I'll address this in the coming days.

veghp added a commit that referenced this issue Jan 9, 2025
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