diff --git a/CPAC/longitudinal_pipeline/longitudinal_workflow.py b/CPAC/longitudinal_pipeline/longitudinal_workflow.py
index 4229fc30c6..9134769d6c 100644
--- a/CPAC/longitudinal_pipeline/longitudinal_workflow.py
+++ b/CPAC/longitudinal_pipeline/longitudinal_workflow.py
@@ -1204,6 +1204,7 @@ def func_longitudinal_template_wf(subject_id, strat_list, config):
         resampled_template.inputs.template = template
         resampled_template.inputs.template_name = template_name
         resampled_template.inputs.tag = tag
+        resampled_template.inputs.orientation = config['desired_orientation']
 
         strat_init.update_resource_pool(
             {template_name: (resampled_template, "resampled_template")}
diff --git a/CPAC/registration/tests/mocks.py b/CPAC/registration/tests/mocks.py
index 18501c5a9a..4f35595abd 100644
--- a/CPAC/registration/tests/mocks.py
+++ b/CPAC/registration/tests/mocks.py
@@ -151,6 +151,7 @@ def configuration_strategy_mock(method="FSL"):
         resampled_template.inputs.template = template
         resampled_template.inputs.template_name = template_name
         resampled_template.inputs.tag = tag
+        resampled_template.inputs.orientation = "RPI"
 
         strat.update_resource_pool(
             {template_name: (resampled_template, "resampled_template")}
diff --git a/CPAC/utils/test_mocks.py b/CPAC/utils/test_mocks.py
index 336488f318..ea16c0be36 100644
--- a/CPAC/utils/test_mocks.py
+++ b/CPAC/utils/test_mocks.py
@@ -235,6 +235,7 @@ def configuration_strategy_mock(method="FSL"):
         resampled_template.inputs.template = template
         resampled_template.inputs.template_name = template_name
         resampled_template.inputs.tag = tag
+        resampled_template.inputs.orientation = "RPI"
 
         strat.update_resource_pool(
             {template_name: (resampled_template, "resampled_template")}