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setup.py
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# Lib
from setuptools import setup, find_packages
exec(open('methylize/version.py').read())
requirements = [
'pandas',
'numpy',
'scipy',
'statsmodels',
'matplotlib',
'methylprep',
'pymysql',
'toolshed',
'interlap',
#'cpv', #'cpv @ git+https://github.com/brentp/[email protected]#egg=cpv',
'adjustText',
'joblib',
'seaborn',
]
setup(
name='methylize',
version=__version__,
description='EWAS Analysis software for Illumina methylation arrays',
long_description=open('README.md').read(),
long_description_content_type='text/markdown',
project_urls = {
"Documentation": "https://life-epigenetics-methylize.readthedocs-hosted.com/en/latest/",
"Source": "https://github.com/FOXOBioScience/methylize/",
"Funding": "https://FOXOBioScience.com/"
},
classifiers=[
'Development Status :: 5 - Production/Stable',
'Environment :: Console',
'License :: OSI Approved :: MIT License',
'Programming Language :: Python :: 3.8',
'Topic :: Scientific/Engineering :: Bio-Informatics',
'Topic :: Scientific/Engineering :: Medical Science Apps.',
'Framework :: Jupyter',
'Intended Audience :: Science/Research',
'Intended Audience :: Financial and Insurance Industry',
'Operating System :: MacOS :: MacOS X',
'Operating System :: Microsoft :: Windows',
'Operating System :: POSIX :: Linux',
],
keywords='analysis methylation dna data processing life epigenetics illumina parallelization',
url='https://github.com/FOXOBioScience/methylize',
license='MIT',
license_files = ('LICENSE.txt',),
author='FOXO Bioscience',
author_email='[email protected]',
packages=find_packages(),
include_package_data=True,
install_requires=requirements,
extras_require={
'dev': [
'pytest',
'coverage'
]
},
setup_requires=['pytest-runner'],
tests_require=[
'pytest',
'coverage'
],
entry_points={
'console_scripts': [
'methylize = methylize:main',
],
},
)