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bdg-formats

Version 0.7.0

  • ISSUE 70: Move record group metadata out from AlignmentRecord.
  • ISSUE 69: Move to avro 1.7.7.
  • ISSUE 66: Clean up fragment

Version 0.6.1

  • ISSUE 63: add optional referenceIndex field to Contigs

Version 0.6.0

  • ISSUE 51: Clean up VariantCallingAnnotations
  • ISSUE 61: Added fragmentLength field to NucleotideContigFragment
  • ISSUE 59: [FORMATS-58] Remove flat genotype.
  • ISSUE 46: [bdg-formats-45] Removing pileup type.
  • ISSUE 48: Generate UML diagrams from source (issue #47)
  • ISSUE 42: fix artifact/schema publishing

Version 0.5.0

  • ISSUE 39: [bdg-formats-38] Add prior/posterior fields, somatic status, and attribute map

Version 0.4.0

  • ISSUE 36: [BDG-FORMATS-35] Change Avro strings to Java String

Version 0.3.2

  • ISSUE 34: Added the oldPosition and oldCigar fields to the bdg.avdl schema.

Version 0.3.1

  • ISSUE 30: [BDG-FORMATS-29] Re-organize the Feature schema

Version 0.3.0

  • ISSUE 32: [BDG-FORMATS-31] Added sampleId to Pileup
  • ISSUE 26: [BDG-FORMATS-26] Removing bulky fields from the pileup record.
  • ISSUE 27: [BDG-FORMATS-27] Add structural variant descriptor.

Version 0.2.0

  • ISSUE 21: Changing read to alignment record.
  • ISSUE 23: Adding script to publish JSON/AVDL schemas to bigdatagenomics.github.io.
  • ISSUE 24: Making modifications to array fields, and adding documentation.
  • ISSUE 18: Adding two new fields, 'featureType' and 'source', to ADAMRecord.
  • ISSUE 16: Adding IntelliJ files to the .gitignore
  • ISSUE 15: Rename ADAMVariant variantAllele --> alternateAllele

Version 0.1.1

  • ISSUE 8: Removes unused record group ID field.
  • ISSUE 7: Move the namespace from 'bdg_formats' to simply 'formats'
  • ISSUE 6: Adds contribution file and updates the license header on the AVDL file.

Version 0.1.0

  • ISSUE 5: Updating to prepare for schema move.
  • ISSUE 1: Moving over the adam.avdl file from adam-format.
  • ISSUE 2: Adding top-level files