.pre-commit-config.yaml

# See https://pre-commit.com for more information
# See https://pre-commit.com/hooks.html for more hooks
repos:
  - repo: https://github.com/pre-commit/pre-commit-hooks
    # These are generic hooks to keep files clean and tidy
    rev: v5.0.0
    hooks:
    - id: trailing-whitespace
    - id: end-of-file-fixer
    - id: check-yaml
    - id: check-added-large-files
    - id: check-merge-conflict
    - id: debug-statements
  - repo: https://github.com/astral-sh/ruff-pre-commit
    # This is python specific linting and formatting using ruff
    rev: v0.9.3
    hooks:
    - id: ruff                                  # Run the linter.
      args: [--fix, --exit-non-zero-on-fix]
    - id: ruff-format                           # Run the formatter.
  - repo: https://github.com/igorshubovych/markdownlint-cli
    # This is markdown linting
    rev: v0.44.0
    hooks:
    - id: markdownlint
  - repo: https://github.com/lorenzwalthert/precommit
    # These are R specific tools to format and lint the code and check for common errors 
    rev: v0.4.3.9003
    hooks: 
    - id: style-files
      args: [--style_pkg=styler, --indent_by=4, --style_fun=tidyverse_style]
    - id: lintr
    - id: readme-rmd-rendered
    - id: parsable-R
    - id: no-browser-statement
    - id: no-debug-statement
    - id: deps-in-desc