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updated the documentation
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docs/usage/index.rst

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@@ -290,7 +290,7 @@ Compositional bias per site
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###########################
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Function names: compositional_bias_per_site; comp_bias_per_site; cbps |br|
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Command line interface: pk_compositional_bias_per_site; pk_compositional_bias_per_site; pk_cbps
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Command line interface: pk_compositional_bias_per_site; pk_comp_bias_per_site; pk_cbps
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Calculates compositional bias per site in an alignment.
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@@ -1337,9 +1337,9 @@ Calculate treeness statistic for a phylogeny.
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Higher treeness values are thought to be desirable because they
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represent a higher signal-to-noise ratio.
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Treeness describes the proportion of the tree distance found on
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internal branches. Treeness can be used as a measure of the
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signal-to-noise ratio in a phylogeny.
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Treeness is the sum of internal branch lengths divided by the total
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tree length. Therefore, values range from 0 to 1. Treeness can be
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used as a measure of the signal-to-noise ratio in a phylogeny.
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Calculate treeness (also referred to as stemminess) following
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Lanyon, The Auk (1988), doi: 10.1093/auk/105.3.565 and

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