File tree 1 file changed +4
-4
lines changed
1 file changed +4
-4
lines changed Original file line number Diff line number Diff line change @@ -290,7 +290,7 @@ Compositional bias per site
290
290
###########################
291
291
292
292
Function names: compositional_bias_per_site; comp_bias_per_site; cbps |br |
293
- Command line interface: pk_compositional_bias_per_site; pk_compositional_bias_per_site ; pk_cbps
293
+ Command line interface: pk_compositional_bias_per_site; pk_comp_bias_per_site ; pk_cbps
294
294
295
295
Calculates compositional bias per site in an alignment.
296
296
@@ -1337,9 +1337,9 @@ Calculate treeness statistic for a phylogeny.
1337
1337
Higher treeness values are thought to be desirable because they
1338
1338
represent a higher signal-to-noise ratio.
1339
1339
1340
- Treeness describes the proportion of the tree distance found on
1341
- internal branches. Treeness can be used as a measure of the
1342
- signal-to-noise ratio in a phylogeny.
1340
+ Treeness is the sum of internal branch lengths divided by the total
1341
+ tree length. Therefore, values range from 0 to 1. Treeness can be
1342
+ used as a measure of the signal-to-noise ratio in a phylogeny.
1343
1343
1344
1344
Calculate treeness (also referred to as stemminess) following
1345
1345
Lanyon, The Auk (1988), doi: 10.1093/auk/105.3.565 and
You can’t perform that action at this time.
0 commit comments