package_installation.txt

install.packages("https://cran.r-project.org/src/contrib/Archive/RandomFieldsUtils/RandomFieldsUtils_1.2.5.tar.gz", repos = NULL, type = "source")

install.packages("sp")

install.packages("https://cran.r-project.org/src/contrib/Archive/RandomFields/RandomFields_3.3.14.tar.gz", repos = NULL, type = "source")

install.packages(c("checkmate", "dplyr", "raster", "spatstat.geom", "igraph", "fasterize", "sf", "Rcpp"))
install.packages(c("spatstat.random", "spatstat.sparse", "abind", "tensor", "goftest"))

install.packages("https://cran.r-project.org/src/contrib/Archive/spatstat.core/spatstat.core_2.4-4.tar.gz", repos = NULL, type = "source")

#### Install and Load necessary packages ####
install_packages <- function(packages) {
  for (package in packages) {
    if (!requireNamespace(package, quietly = TRUE)) {
      install.packages(package)
    }
    library(package, character.only = TRUE)
  }
}

# Packages to install and load
packages <- c("arrow", "sf", "raster", "fasterize", "rgeos", "tidyr", "readr", "dplyr", "units", "mgcv",
              "foreach", "doParallel", "parallelly", "ranger", "tidyverse", "kableExtra", "ggplot2", "patchwork", "viridis")

install_packages(packages)

install.packages("devtools")

devtools::install_github("pedersen-fisheries-lab/sspm")

install.packages("https://cran.r-project.org/src/contrib/Archive/NLMR/NLMR_1.1.tar.gz", repos = NULL, type = "source")