diff --git a/src/phabox2/contamination.py b/src/phabox2/contamination.py index 05d9b7e..dfbdb50 100644 --- a/src/phabox2/contamination.py +++ b/src/phabox2/contamination.py @@ -142,7 +142,7 @@ def run(inputs): # Prepare file headers contamination_header = "Accession\tLength\tTotal_genes\tViral_genes\tProkaryotic_genes\tKmer_freq\tContamination\tProvirus\tPure_viral\n" candidate_prophage_header = "Accession\tLength\tTotal_genes\tViral_genes\tProkaryotic_genes\tProvirus\tContamination\tProviral_length\tProkaryotic_length\tRegion_types\tRegion_lengths\tRegion_coords_bp\tRegion_coords_genes\tRegion_viral_genes\tRegion_prokaryotic_genes\n" - gene_annotation_header = "Accession\tGene_num\tStart\tEnd\tStrand\tGC\tmarker_label\tmarker_name\tEvalue\tmarker_name\n" + gene_annotation_header = "Accession\tGene_num\tStart\tEnd\tStrand\tGC\tmarker_label\tdomain_name\tEvalue\tmarker_name\n" records = [] label = {1:"viral", -1: "microbial", 0: "No match"}