From a0280ce4a6cea653aee5c2e4041ee75e73336b60 Mon Sep 17 00:00:00 2001 From: Matt Menzenski Date: Fri, 17 Nov 2023 09:34:54 -0600 Subject: [PATCH 01/13] Start scaffolding things to test change stream handling more specifically --- .pre-commit-config.yaml | 8 + compose.yaml | 54 ++ meltano.yml | 24 + mongodb-init.sh | 46 ++ mongodb-replicaset.key | 16 + poetry.lock | 1076 ++++++++++++++++++----------------- pyproject.toml | 2 + tests/utilities/__init__.py | 0 tests/utilities/seed.py | 74 +++ 9 files changed, 793 insertions(+), 507 deletions(-) create mode 100644 compose.yaml create mode 100755 mongodb-init.sh create mode 100644 mongodb-replicaset.key create mode 100644 tests/utilities/__init__.py create mode 100644 tests/utilities/seed.py diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index ffd6e99..beb7b94 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -9,7 +9,15 @@ repos: - id: check-vcs-permalinks - id: detect-private-key - id: end-of-file-fixer + exclude: mongodb-replicaset.key - id: name-tests-test + args: + - --pytest + exclude: tests/utilities/ + - id: no-commit-to-branch + args: + - --branch + - main - id: pretty-format-json args: - --autofix diff --git a/compose.yaml b/compose.yaml new file mode 100644 index 0000000..0395bb6 --- /dev/null +++ b/compose.yaml @@ -0,0 +1,54 @@ +version: '3' +services: + # replica set primary + tap-mongodb-test-db-1: + container_name: tap-mongodb-test-db-1 + image: mongo:4.4 + depends_on: + - tap-mongodb-test-db-2 + - tap-mongodb-test-db-3 + environment: + MONGO_INITDB_ROOT_USERNAME: ${MONGO_INITDB_ROOT_USERNAME} + MONGO_INITDB_ROOT_PASSWORD: ${MONGO_INITDB_ROOT_PASSWORD} + ports: + - 27000:27000 + volumes: + - ./mongodb-replicaset.key:/data/replica.key + restart: always + command: mongod --bind_ip all --replSet rs0 --oplogSize 1 --quiet --keyFile /data/replica.key --port 27000 + # replica set secondary + tap-mongodb-test-db-2: + container_name: tap-mongodb-test-db-2 + image: mongo:4.4 + expose: + - 27000 + volumes: + - ./mongodb-replicaset.key:/data/replica.key + restart: always + command: mongod --bind_ip all --replSet rs0 --oplogSize 1 --quiet --keyFile /data/replica.key --port 27000 + # replica set arbiter + tap-mongodb-test-db-3: + container_name: tap-mongodb-test-db-3 + image: mongo:4.4 + expose: + - 27000 + volumes: + - ./mongodb-replicaset.key:/data/replica.key + restart: always + command: mongod --bind_ip all --replSet rs0 --oplogSize 1 --quiet --keyFile /data/replica.key --port 27000 + tap-mongodb-test-db-init: + container_name: tap-mongodb-test-db-init + image: mongo:4.4 + depends_on: + - tap-mongodb-test-db-1 + - tap-mongodb-test-db-2 + - tap-mongodb-test-db-3 + environment: + MONGO_INITDB_ROOT_USERNAME: ${MONGO_INITDB_ROOT_USERNAME} + MONGO_INITDB_ROOT_PASSWORD: ${MONGO_INITDB_ROOT_PASSWORD} + volumes: + - ./mongodb-init.sh:/scripts/mongodb_rs_init.sh + restart: on-failure + entrypoint: + - /bin/bash + - /scripts/mongodb_rs_init.sh diff --git a/meltano.yml b/meltano.yml index b72a91e..f9f47a8 100644 --- a/meltano.yml +++ b/meltano.yml @@ -115,6 +115,30 @@ plugins: '*': replication-key: replication_key replication-method: INCREMENTAL + - name: tap-test-service-backfill + inherit_from: tap-mongodb + config: + mongodb_connection_string: mongodb://admin:password@localhost:27000/ + database: test_db + prefix: backfill_test_db + select: + - backfill_test_db_user.* + metadata: + '*': + replication-key: replication_key + replication-method: INCREMENTAL + - name: tap-test-service-streaming + inherit_from: tap-mongodb + config: + mongodb_connection_string: mongodb://admin:password@localhost:27000/ + database: test_db + prefix: streaming_test_db + select: + - streaming_test_db_user.* + metadata: + '*': + replication-key: replication_key + replication-method: LOG_BASED loaders: - name: target-jsonl variant: andyh1203 diff --git a/mongodb-init.sh b/mongodb-init.sh new file mode 100755 index 0000000..1948344 --- /dev/null +++ b/mongodb-init.sh @@ -0,0 +1,46 @@ +#!/bin/bash + +m1=tap-mongodb-test-db-1 +m2=tap-mongodb-test-db-2 +m3=tap-mongodb-test-db-2 +port=${PORT:-27000} + +echo "###### Waiting for ${m1} instance startup.." +until mongosh --host ${m1}:${port} --eval 'quit(db.runCommand({ ping: 1 }).ok ? 0 : 2)' &>/dev/null; do + printf '.' + sleep 1 +done +echo "###### Working ${m1} instance found, initiating user setup & initializing rs setup.." + +# setup user + pass and initialize replica sets +mongosh --host ${m1}:${port} <=0.15.2)"] [[package]] name = "boto3" -version = "1.28.32" +version = "1.29.1" description = "The AWS SDK for Python" category = "main" optional = true python-versions = ">= 3.7" files = [ - {file = "boto3-1.28.32-py3-none-any.whl", hash = "sha256:ed787f250ce2562c7744395bdf32b5a7bc9184126ef50a75e97bcb66043dccf3"}, - {file = "boto3-1.28.32.tar.gz", hash = "sha256:b505faa126db84e226f6f8d242a798fae30a725f0cac8a76c6aca9ace4e8eb28"}, + {file = "boto3-1.29.1-py3-none-any.whl", hash = "sha256:192695305fa65012d21f78ee852b91cb56dd571e84d51fb71f756302bf19d23f"}, + {file = "boto3-1.29.1.tar.gz", hash = "sha256:20285ebf4e98b2905a88aeb162b4f77ff908b2e3e31038b3223e593789290aa3"}, ] [package.dependencies] -botocore = ">=1.31.32,<1.32.0" +botocore = ">=1.32.1,<1.33.0" jmespath = ">=0.7.1,<2.0.0" -s3transfer = ">=0.6.0,<0.7.0" +s3transfer = ">=0.7.0,<0.8.0" [package.extras] crt = ["botocore[crt] (>=1.21.0,<2.0a0)"] [[package]] name = "botocore" -version = "1.31.32" +version = "1.32.1" description = "Low-level, data-driven core of boto 3." category = "main" optional = true python-versions = ">= 3.7" files = [ - {file = "botocore-1.31.32-py3-none-any.whl", hash = "sha256:8992ac186988c4b4cc168e8e479e9472da1442b193c1bf7c9dcd1877ec62d23c"}, - {file = "botocore-1.31.32.tar.gz", hash = "sha256:7a07d8dc8cc47bf23af39409ada81f388eb78233e1bb2cde0c415756da753664"}, + {file = "botocore-1.32.1-py3-none-any.whl", hash = "sha256:1d9c0ff3eb7828a8bd8c5c7f12cd9d8c05c6fe4c616ef963fdaab538a0da3809"}, + {file = "botocore-1.32.1.tar.gz", hash = "sha256:fcf3cc2913afba8e5f7ebcc15e8f6bfae844ab64bf983bf5a6fe3bb54cce239d"}, ] [package.dependencies] jmespath = ">=0.7.1,<2.0.0" python-dateutil = ">=2.1,<3.0.0" -urllib3 = ">=1.25.4,<1.27" +urllib3 = [ + {version = ">=1.25.4,<1.27", markers = "python_version < \"3.10\""}, + {version = ">=1.25.4,<2.1", markers = "python_version >= \"3.10\""}, +] [package.extras] -crt = ["awscrt (==0.16.26)"] +crt = ["awscrt (==0.19.12)"] [[package]] name = "certifi" @@ -261,87 +264,102 @@ pycparser = "*" [[package]] name = "charset-normalizer" -version = "3.2.0" +version = "3.3.2" description = "The Real First Universal Charset Detector. 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["testing"] } pylint = "^3.0.0a6" +loguru = "^0.7.2" [tool.poetry.extras] s3 = ["fs-s3fs"] @@ -49,6 +50,7 @@ target-version = ['py311'] [tool.poetry.scripts] # CLI declaration tap-mongodb = 'tap_mongodb.tap:TapMongoDB.cli' +seed = "tests.utilities.seed:main" [tool.yamlfix] comments_min_spaces_from_content = 2 diff --git a/tests/utilities/__init__.py b/tests/utilities/__init__.py new file mode 100644 index 0000000..e69de29 diff --git a/tests/utilities/seed.py b/tests/utilities/seed.py new file mode 100644 index 0000000..f4f931a --- /dev/null +++ b/tests/utilities/seed.py @@ -0,0 +1,74 @@ +"""Utility module that tests may use to seed a MongoDB database in order to test tap-mongodb behavior.""" + + +import os +from dataclasses import asdict, dataclass, field +from datetime import datetime, timezone +from typing import List, Optional +from uuid import uuid4 + +from loguru import logger +from pymongo import MongoClient +from pymongo.collection import Collection +from pymongo.database import Database +from pymongo.results import InsertOneResult + + +@dataclass +class User: # pylint: disable=too-many-instance-attributes + """Generic User model containing members with a mix of data types.""" + + first_name: str + last_name: str + age: int + created_at: datetime = datetime.now(timezone.utc) + updated_at: datetime = datetime.now(timezone.utc) + deleted: bool = False + user_id: str = str(uuid4()) + hobbies: List[str] = field(default_factory=list) + + +def insert_user(collection: Collection, user: User) -> User: + """Insert the provided User record into the provided Collection.""" + now: datetime = datetime.now(timezone.utc) + user.created_at = now + user.updated_at = now + result: InsertOneResult = collection.insert_one(asdict(user)) + logger.info(f"Inserted User {user.id}, resulting _id {result.inserted_id}") + return user + + +def update_user(collection: Collection, user_id: str, user: User) -> User: # pylint: disable=unused-argument + """Update the provided User record in the provided Collection.""" + + +def get_user(collection: Collection, user_id: str) -> Optional[User]: # pylint: disable=unused-argument + """Return one User by id from the provided Collection.""" + + +def delete_user(collection: Collection, user_id: str) -> User: # pylint: disable=unused-argument + """Delete (soft-delete) one User by id from the provided Collection.""" + + +def get_collection() -> Collection: + """Returns a MongoDB Collection based on configured settings.""" + connection_string: str = os.getenv("TAP_MONGODB_TEST_CONNECTION_STRING") + if not connection_string: + raise ValueError("connection_string must be provided") + database_name: str = "test_db" + collection_name: str = "User" + client: MongoClient = MongoClient(connection_string) + database: Database = client.get_database(database_name) + collection: Collection = database.get_collection(collection_name) + return collection + + +def main() -> None: + """Run a series of seed operations on a MongoDB database..""" + collection: Collection = get_collection() + user: User = User(first_name="Ted", last_name="Lasso", age=48, hobbies=["football"]) + insert_user(collection, user) + + +if __name__ == "__main__": + main() From 6ea1f0cbe6bf740820d2d98b4d979aab32e5b000 Mon Sep 17 00:00:00 2001 From: Matt Menzenski Date: Fri, 24 Nov 2023 11:08:21 -0600 Subject: [PATCH 02/13] some more refactoring, start adding resume strategy setting and tests --- .pre-commit-config.yaml | 2 -- poetry.lock | 19 ++++++++++++++++++- pyproject.toml | 1 + tap_mongodb/connector.py | 16 ++++------------ tap_mongodb/streams.py | 12 +++--------- tap_mongodb/tap.py | 26 ++++++++++++++++++++++++++ tap_mongodb/types.py | 25 ++++++++++++++++++++++++- tap_mongodb/utils.py | 32 ++++++++++++++++++++++++++++++++ tests/types_test.py | 2 +- tests/utils_test.py | 35 +++++++++++++++++++++++++++++++++++ 10 files changed, 144 insertions(+), 26 deletions(-) create mode 100644 tap_mongodb/utils.py create mode 100644 tests/utils_test.py diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index beb7b94..958bc03 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -11,8 +11,6 @@ repos: - id: end-of-file-fixer exclude: mongodb-replicaset.key - id: name-tests-test - args: - - --pytest exclude: tests/utilities/ - id: no-commit-to-branch args: diff --git a/poetry.lock b/poetry.lock index a9e7e39..b834a0c 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1754,6 +1754,23 @@ postgresql-psycopgbinary = ["psycopg[binary] (>=3.0.7)"] pymysql = ["pymysql"] sqlcipher = ["sqlcipher3-binary"] +[[package]] +name = "strenum" +version = "0.4.15" +description = "An Enum that inherits from str." +category = "main" +optional = false +python-versions = "*" +files = [ + {file = "StrEnum-0.4.15-py3-none-any.whl", hash = "sha256:a30cda4af7cc6b5bf52c8055bc4bf4b2b6b14a93b574626da33df53cf7740659"}, + {file = "StrEnum-0.4.15.tar.gz", hash = "sha256:878fb5ab705442070e4dd1929bb5e2249511c0bcf2b0eeacf3bcd80875c82eff"}, +] + +[package.extras] +docs = ["myst-parser[linkify]", "sphinx", "sphinx-rtd-theme"] +release = ["twine"] +test = ["pylint", "pytest", "pytest-black", "pytest-cov", "pytest-pylint"] + [[package]] name = "tokenize-rt" version = "5.0.0" @@ -1987,4 +2004,4 @@ s3 = ["fs-s3fs"] [metadata] lock-version = "2.0" python-versions = "<3.12,>=3.7.2" -content-hash = "d506eb53bcef3167ac56450b996b693d97a7adcebf1da1f10f1ccc7921b126ca" +content-hash = "957cfde3d78fa45068f28c9efffb834cf37b5c7bc21fe4e8d45fcef84affce92" diff --git a/pyproject.toml b/pyproject.toml index de9fa4d..7d3332b 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -19,6 +19,7 @@ singer-sdk = { version = "^0.31.1" } fs-s3fs = { version = "^1.1.1", optional = true } pymongo = "^4.4.1" "backports.cached-property" = { version = "^1.0.2" } +strenum = "^0.4.15" [tool.poetry.group.dev.dependencies] pytest = "^7.3.1" diff --git a/tap_mongodb/connector.py b/tap_mongodb/connector.py index ca6f35b..f6be8de 100644 --- a/tap_mongodb/connector.py +++ b/tap_mongodb/connector.py @@ -2,7 +2,7 @@ import sys from logging import Logger, getLogger -from typing import Any, Dict, List, Optional, Tuple +from typing import Any, Dict, List, Optional from pymongo import MongoClient from pymongo.database import Database @@ -10,6 +10,7 @@ from singer_sdk._singerlib.catalog import CatalogEntry, MetadataMapping, Schema from tap_mongodb.schema import SCHEMA +from tap_mongodb.types import MongoVersion if sys.version_info[:2] < (3, 8): from backports.cached_property import cached_property @@ -17,15 +18,6 @@ from functools import cached_property -try: - from typing import TypeAlias # pylint: disable=ungrouped-imports - - MongoVersion: TypeAlias = Tuple[int, int] -except ImportError: - TypeAlias = None - MongoVersion = Tuple[int, int] - - class MongoDBConnector: """MongoDB/DocumentDB connector class""" @@ -43,7 +35,7 @@ def __init__( # pylint: disable=too-many-arguments self._datetime_conversion: str = datetime_conversion.upper() self._prefix: Optional[str] = prefix self._logger: Logger = getLogger(__name__) - self._version: Optional[MongoVersion] = None + self._version: MongoVersion @cached_property def mongo_client(self) -> MongoClient: @@ -66,7 +58,7 @@ def database(self) -> Database: return self.mongo_client[self._db_name] @property - def version(self) -> Optional[MongoVersion]: + def version(self) -> MongoVersion: """Returns the MongoVersion that is being used.""" return self._version diff --git a/tap_mongodb/streams.py b/tap_mongodb/streams.py index 66584cd..616cfdc 100644 --- a/tap_mongodb/streams.py +++ b/tap_mongodb/streams.py @@ -4,7 +4,7 @@ import math from datetime import datetime -from typing import Any, Generator, Iterable, Optional +from typing import Any, Dict, Generator, Iterable, Optional from bson.objectid import ObjectId from pendulum import DateTime @@ -23,11 +23,12 @@ from tap_mongodb.connector import MongoDBConnector from tap_mongodb.types import IncrementalId +from tap_mongodb.utils import to_object_id DEFAULT_START_DATE: str = "1970-01-01" -def recursive_replace_empty_in_dict(dct): +def recursive_replace_empty_in_dict(dct: Dict) -> Dict: """ Recursively replace empty values with None in a dictionary. NaN, inf, and -inf are unable to be parsed by the json library, so these values will be replaced with None. @@ -46,13 +47,6 @@ def recursive_replace_empty_in_dict(dct): return dct -def to_object_id(replication_key_value: str) -> ObjectId: - """Converts an ISO-8601 date string into a BSON ObjectId.""" - incremental_id: IncrementalId = IncrementalId.from_string(replication_key_value) - - return incremental_id.object_id - - class MongoDBCollectionStream(Stream): """Stream class for mongodb streams.""" diff --git a/tap_mongodb/tap.py b/tap_mongodb/tap.py index 531751f..98ab61e 100644 --- a/tap_mongodb/tap.py +++ b/tap_mongodb/tap.py @@ -159,6 +159,32 @@ class TapMongoDB(Tap): required=False, description="Stream map config. See https://sdk.meltano.com/en/latest/stream_maps.html for documentation.", ), + th.Property( + "change_stream_resume_strategy", + th.StringType, + required=False, + default="resume_after", + description=( + "Only used when tap is run in log-based replication mode. This setting specifies how the tap creates a " + "new change stream on runs after the first. The default is `resume_after` (see " + "https://www.mongodb.com/docs/manual/changeStreams/#resumeafter-for-change-streams), which was added " + "in MongoDB 3.6 when the ChangeStream API was introduced. The `start_after` setting (see " + "https://www.mongodb.com/docs/manual/changeStreams/#startafter-for-change-streams) requires MongoDB " + "version 4.2 or greater. The `start_at_operation_time` setting (see " + "https://www.mongodb.com/docs/manual/changeStreams/#footnote-start-time) requires MongoDB version 4.0 " + "or greater. Note that `resume_after` and `start_after` will use a BSON resume token as the " + "replication key value, while `start_at_operation_time` will use an ISO 8601 datetime string. You may " + "thus switch back and forth between `resume_after` and `start_after` settings (provided the MongoDB" + "version is at least 4.2) freely, but you will need to do a full refresh and/or delete the stream " + "state before changing the setting to `start_at_operation_time`. If the value provided to this setting " + "is not compatible with the MongoDB version in use, this setting defaults to `resume_after`." + ), + allowed_values=[ + "resume_after", + "start_after", + "start_at_operation_time", + ], + ), ).to_dict() config_jsonschema["properties"]["operation_types"]["items"]["enum"] = [ "create", diff --git a/tap_mongodb/types.py b/tap_mongodb/types.py index 0c0cf62..6843235 100644 --- a/tap_mongodb/types.py +++ b/tap_mongodb/types.py @@ -1,12 +1,35 @@ """Custom type definitions for tap-mongodb.""" import re +import sys from datetime import datetime -from typing import Optional +from typing import Optional, Tuple from bson.objectid import ObjectId from typing_extensions import Self +try: + from typing import TypeAlias # pylint: disable=ungrouped-imports + + MongoVersion: TypeAlias = Tuple[int, int] +except ImportError: + TypeAlias = None + MongoVersion = Tuple[int, int] + + +if sys.version_info[:2] < (3, 11): + from strenum import StrEnum +else: + from enum import StrEnum + + +class ResumeStrategy(StrEnum): + """Enum type representing the strategy used to resume a change stream.""" + + RESUME_AFTER = "resume_after" + START_AFTER = "start_after" + START_AT_OPERATION_TIME = "start_at_operation_time" + class IncrementalId: """ID of a record emitted by tap-mongodb in incremental replication mode. diff --git a/tap_mongodb/utils.py b/tap_mongodb/utils.py new file mode 100644 index 0000000..c48ebd3 --- /dev/null +++ b/tap_mongodb/utils.py @@ -0,0 +1,32 @@ +"""Utility module containing some functions that don't fit well in other modules.""" + + +from bson.objectid import ObjectId + +from tap_mongodb.types import IncrementalId, MongoVersion, ResumeStrategy + + +def get_resume_strategy(mongo_version: MongoVersion, change_stream_resume_strategy: str) -> ResumeStrategy: + """Determine the appropriate ResumeStrategy based on MongoDB version and configured setting.""" + # validate that change_stream_resume_strategy is one of the allowed values + if change_stream_resume_strategy not in { + "resume_after", + "start_after", + "start_at_operation_time", + }: + raise ValueError("unsupported change_stream_resume_strategy setting") + # validate that the mongodb version is at least 3.6 + if mongo_version < (3, 6): + raise ValueError("unsupported version of MongoDB") + if (4, 0) <= mongo_version and change_stream_resume_strategy == "start_at_operation_time": + return ResumeStrategy.START_AT_OPERATION_TIME + if (4, 2) <= mongo_version and change_stream_resume_strategy == "start_after": + return ResumeStrategy.START_AFTER + return ResumeStrategy.RESUME_AFTER + + +def to_object_id(replication_key_value: str) -> ObjectId: + """Converts an ISO-8601 date string into a BSON ObjectId.""" + incremental_id: IncrementalId = IncrementalId.from_string(replication_key_value) + + return incremental_id.object_id diff --git a/tests/types_test.py b/tests/types_test.py index da5dd99..ea00798 100644 --- a/tests/types_test.py +++ b/tests/types_test.py @@ -1,4 +1,4 @@ -"""Tests of the IncrementalId class.""" +"""Tests of tap-mongodb custom types.""" from datetime import datetime diff --git a/tests/utils_test.py b/tests/utils_test.py new file mode 100644 index 0000000..1d614ba --- /dev/null +++ b/tests/utils_test.py @@ -0,0 +1,35 @@ +"""Tests of the utils module.""" + +import pytest + +from tap_mongodb.types import MongoVersion, ResumeStrategy +from tap_mongodb.utils import get_resume_strategy + + +def test_that_invalid_setting_throws() -> None: + """Test that an invalid change_stream_resume_strategy value throws the expected exception.""" + mongo_version: MongoVersion = (4, 0) + change_stream_resume_strategy: str = "fake_value" + with pytest.raises(ValueError): + get_resume_strategy(mongo_version, change_stream_resume_strategy) + + +def test_that_resume_after_is_returned_on_pre_4_0_mongo_version() -> None: + """Test that resume_after is returned for MongoDB version 3.6 even though start_after was configured""" + mongo_version: MongoVersion = (3, 6) + change_stream_resume_strategy: str = "start_after" + assert get_resume_strategy(mongo_version, change_stream_resume_strategy) == ResumeStrategy.RESUME_AFTER + + +def test_that_resume_after_is_returned_on_pre_4_0_mongo_version_2() -> None: + """Test that resume_after is returned for MongoDB version 3.6 even though start_at_operation_time was configured""" + mongo_version: MongoVersion = (3, 6) + change_stream_resume_strategy: str = "start_at_operation_time" + assert get_resume_strategy(mongo_version, change_stream_resume_strategy) == ResumeStrategy.RESUME_AFTER + + +def test_that_resume_after_is_returned_on_pre_4_0_mongo_version_3() -> None: + """Test that resume_after is returned for MongoDB version 3.6 when resume_after is configured""" + mongo_version: MongoVersion = (3, 6) + change_stream_resume_strategy: str = "resume_after" + assert get_resume_strategy(mongo_version, change_stream_resume_strategy) == ResumeStrategy.RESUME_AFTER From 8d61b87f0dd907f0c5292e126932cdc44fdadbbb Mon Sep 17 00:00:00 2001 From: Matt Menzenski Date: Fri, 24 Nov 2023 14:29:33 -0600 Subject: [PATCH 03/13] more tests, start splitting up the giant method --- tap_mongodb/streams.py | 339 +++++++++++++++++++++-------------------- tests/utils_test.py | 34 ++++- 2 files changed, 206 insertions(+), 167 deletions(-) diff --git a/tap_mongodb/streams.py b/tap_mongodb/streams.py index 616cfdc..354fbb6 100644 --- a/tap_mongodb/streams.py +++ b/tap_mongodb/streams.py @@ -22,8 +22,8 @@ from singer_sdk.streams.core import REPLICATION_INCREMENTAL, REPLICATION_LOG_BASED, Stream, TypeConformanceLevel from tap_mongodb.connector import MongoDBConnector -from tap_mongodb.types import IncrementalId -from tap_mongodb.utils import to_object_id +from tap_mongodb.types import IncrementalId, MongoVersion, ResumeStrategy +from tap_mongodb.utils import get_resume_strategy, to_object_id DEFAULT_START_DATE: str = "1970-01-01" @@ -191,174 +191,185 @@ def _generate_record_messages(self, record: dict) -> Generator[singer.RecordMess ) yield record_message + def _get_records_incremental( + self, bookmark: str, should_add_metadata: bool, collection: Collection + ) -> Iterable[dict]: + """Return a generator of record-type dictionary objects when running in incremental replication mode.""" + if bookmark: + self.logger.debug(f"using existing bookmark: {bookmark}") + start_date = to_object_id(bookmark) + else: + start_date_str = self.config.get("start_date", DEFAULT_START_DATE) + self.logger.debug(f"no bookmark - using start date: {start_date_str}") + start_date = to_object_id(start_date_str) + + for record in collection.find({"_id": {"$gt": start_date}}).sort([("_id", ASCENDING)]): + object_id: ObjectId = record["_id"] + incremental_id: IncrementalId = IncrementalId.from_object_id(object_id) + + recursive_replace_empty_in_dict(record) + + parsed_record = { + "replication_key": str(incremental_id), + "object_id": str(object_id), + "document": record, + "operation_type": None, + "cluster_time": None, + "namespace": { + "database": collection.database.name, + "collection": collection.name, + }, + } + if should_add_metadata: + parsed_record["_sdc_batched_at"] = datetime.utcnow() + yield parsed_record + + def _get_records_log_based( + self, bookmark: str, should_add_metadata: bool, collection: Collection + ) -> Iterable[dict]: + """Return a generator of record-type dictionary objects when running in log-based replication mode.""" + # pylint: disable=too-many-locals,too-many-branches,too-many-statements + change_stream_options = {"full_document": "updateLookup"} + mongo_version: MongoVersion = self._connector.version + change_stream_resume_strategy: str = self.config.get("change_stream_resume_strategy", "resume_after") + resume_strategy: ResumeStrategy = get_resume_strategy(mongo_version, change_stream_resume_strategy) + + if bookmark is not None and bookmark != DEFAULT_START_DATE: + self.logger.debug(f"using bookmark: {bookmark}") + if resume_strategy == ResumeStrategy.START_AFTER: + change_stream_options["start_after"] = {"_data": bookmark} + elif resume_strategy == ResumeStrategy.RESUME_AFTER: + change_stream_options["resume_after"] = {"_data": bookmark} + operation_types_allowlist: set = set(self.config.get("operation_types")) + has_seen_a_record: bool = False + keep_open: bool = True + + try: + change_stream = collection.watch(**change_stream_options) + except OperationFailure as operation_failure: + if ( + operation_failure.code == 136 + and "modifyChangeStreams has not been run" in operation_failure.details["errmsg"] + and self.config["allow_modify_change_streams"] + ): + admin_db: Database = self._connector.mongo_client["admin"] + result = admin_db.command( + "modifyChangeStreams", + database=collection.database.name, + collection=collection.name, + enable=True, + ) + if result and result["ok"]: + change_stream = collection.watch(**change_stream_options) + else: + raise RuntimeError( + f"Unable to enable change streams on collection {collection.name}" + ) from operation_failure + elif ( + resume_strategy == ResumeStrategy.RESUME_AFTER + and operation_failure.code == 286 + and "as the resume point may no longer be in the oplog." in operation_failure.details["errmsg"] + ): + self.logger.warning("Unable to resume change stream from resume token. Resetting resume token.") + change_stream_options.pop("resume_after", None) + change_stream = collection.watch(**change_stream_options) + else: + self.logger.critical(f"operation_failure on collection.watch: {operation_failure}") + raise operation_failure + + except Exception as exception: + self.logger.critical(exception) + raise exception + + with change_stream: + while change_stream.alive and keep_open: + record: Optional[_DocumentType] + try: + record = change_stream.try_next() + except OperationFailure as operation_failure: + if ( + resume_strategy == ResumeStrategy.RESUME_AFTER + and operation_failure.code == 286 + and "as the resume point may no longer be in the oplog." in operation_failure.details["errmsg"] + ): + self.logger.warning(f"operation_failure on try_next: {operation_failure}") + record = None + else: + self.logger.critical(f"operation_failure on try_next: {operation_failure}") + raise operation_failure + # if we have processed any records, a None record means that we've caught up to the end of the + # stream - set keep_open to False so that the change stream is closed and the tap exits. + # if no records have been processed, a None record means that there has been no activity in the + # collection since the change stream was opened. MongoDB and DocumentDB have different behavior here + # (MongoDB change streams have a valid/resumable resume_token immediately, while DocumentDB change + # streams have a None resume_token until there has been an event published to the change stream). + # The intent of the following code is the following: + # - If a change stream is opened and there are no records, hold it open until a record appears, + # then yield that record (whose _id is set to the change stream's resume token, so that the + # change stream can be resumed from this point by a later running of the tap). + # - If a change stream is opened and there is at least one record, yield all records + if record is None and not has_seen_a_record and change_stream.resume_token is not None: + # if we're in this block, we're in MongoDB specifically - DocumentDB will have a None resume + # token here. If we take no action, the tap will remain open and idle until a message appears + # in the change stream, then it will yield that record and close. That's not ideal because it + # doesn't need to wait around for activity. It can just yield a "dummy" record with the resume + # token from the change stream, exit immediately, and then pick up processing the change stream + # from this point the next time the tap is run. So that's what we do. + yield { + "replication_key": change_stream.resume_token["_data"], + "object_id": None, + "document": None, + "operation_type": None, + "cluster_time": None, + "namespace": None, + } + has_seen_a_record = True + + if record is None and has_seen_a_record: + keep_open = False + if record is not None: + operation_type = record["operationType"] + if operation_type not in operation_types_allowlist: + continue + cluster_time: datetime = record["clusterTime"].as_datetime() + # fullDocument key is not present on delete events - if it is missing, fall back to documentKey + # instead. If that is missing, pass None/null to avoid raising an error. + document = record.get("fullDocument", record.get("documentKey", None)) + object_id: Optional[ObjectId] = document["_id"] if "_id" in document else None + parsed_record = { + "replication_key": record["_id"]["_data"], + "object_id": str(object_id) if object_id is not None else None, + "document": document, + "operation_type": operation_type, + "cluster_time": cluster_time.isoformat(), + "namespace": { + "database": record["ns"]["db"], + "collection": record["ns"]["coll"], + }, + } + if should_add_metadata: + parsed_record["_sdc_extracted_at"] = cluster_time + parsed_record["_sdc_batched_at"] = datetime.utcnow() + if operation_type == "delete": + parsed_record["_sdc_deleted_at"] = cluster_time + yield parsed_record + has_seen_a_record = True + def get_records(self, context: dict | None) -> Iterable[dict]: """Return a generator of record-type dictionary objects.""" - # pylint: disable=too-many-locals,too-many-branches,too-many-statements bookmark: str = self.get_starting_replication_key_value(context) should_add_metadata: bool = self.config.get("add_record_metadata", False) collection: Collection = self._connector.database[self._collection_name] if self.replication_method == REPLICATION_INCREMENTAL: - if bookmark: - self.logger.debug(f"using existing bookmark: {bookmark}") - start_date = to_object_id(bookmark) - else: - start_date_str = self.config.get("start_date", DEFAULT_START_DATE) - self.logger.debug(f"no bookmark - using start date: {start_date_str}") - start_date = to_object_id(start_date_str) - - for record in collection.find({"_id": {"$gt": start_date}}).sort([("_id", ASCENDING)]): - object_id: ObjectId = record["_id"] - incremental_id: IncrementalId = IncrementalId.from_object_id(object_id) - - recursive_replace_empty_in_dict(record) - - parsed_record = { - "replication_key": str(incremental_id), - "object_id": str(object_id), - "document": record, - "operation_type": None, - "cluster_time": None, - "namespace": { - "database": collection.database.name, - "collection": collection.name, - }, - } - if should_add_metadata: - parsed_record["_sdc_batched_at"] = datetime.utcnow() - yield parsed_record - - elif self.replication_method == REPLICATION_LOG_BASED: - change_stream_options = {"full_document": "updateLookup"} - if bookmark is not None and bookmark != DEFAULT_START_DATE: - self.logger.debug(f"using bookmark: {bookmark}") - # if on mongo version 4.2 or above, use start_after instead of resume_after, as the former will - # gracefully open a new change stream if the resume token's event is not present in the oplog, while - # the latter will error in that scenario. - if self._connector.version >= (4, 2): - change_stream_options["start_after"] = {"_data": bookmark} - else: - change_stream_options["resume_after"] = {"_data": bookmark} - operation_types_allowlist: set = set(self.config.get("operation_types")) - has_seen_a_record: bool = False - keep_open: bool = True + return self._get_records_incremental(bookmark, should_add_metadata, collection) - try: - change_stream = collection.watch(**change_stream_options) - except OperationFailure as operation_failure: - if ( - operation_failure.code == 136 - and "modifyChangeStreams has not been run" in operation_failure.details["errmsg"] - and self.config["allow_modify_change_streams"] - ): - admin_db: Database = self._connector.mongo_client["admin"] - result = admin_db.command( - "modifyChangeStreams", - database=collection.database.name, - collection=collection.name, - enable=True, - ) - if result and result["ok"]: - change_stream = collection.watch(**change_stream_options) - else: - raise RuntimeError( - f"Unable to enable change streams on collection {collection.name}" - ) from operation_failure - elif ( - self._connector.version < (4, 2) - and operation_failure.code == 286 - and "as the resume point may no longer be in the oplog." in operation_failure.details["errmsg"] - ): - self.logger.warning("Unable to resume change stream from resume token. Resetting resume token.") - change_stream_options.pop("resume_after", None) - change_stream = collection.watch(**change_stream_options) - else: - self.logger.critical(f"operation_failure on collection.watch: {operation_failure}") - raise operation_failure - - except Exception as exception: - self.logger.critical(exception) - raise exception - - with change_stream: - while change_stream.alive and keep_open: - record: Optional[_DocumentType] - try: - record = change_stream.try_next() - except OperationFailure as operation_failure: - if ( - self._connector.version < (4, 2) - and operation_failure.code == 286 - and "as the resume point may no longer be in the oplog." - in operation_failure.details["errmsg"] - ): - self.logger.warning(f"operation_failure on try_next: {operation_failure}") - record = None - else: - self.logger.critical(f"operation_failure on try_next: {operation_failure}") - raise operation_failure - # if we have processed any records, a None record means that we've caught up to the end of the - # stream - set keep_open to False so that the change stream is closed and the tap exits. - # if no records have been processed, a None record means that there has been no activity in the - # collection since the change stream was opened. MongoDB and DocumentDB have different behavior here - # (MongoDB change streams have a valid/resumable resume_token immediately, while DocumentDB change - # streams have a None resume_token until there has been an event published to the change stream). - # The intent of the following code is the following: - # - If a change stream is opened and there are no records, hold it open until a record appears, - # then yield that record (whose _id is set to the change stream's resume token, so that the - # change stream can be resumed from this point by a later running of the tap). - # - If a change stream is opened and there is at least one record, yield all records - if record is None and not has_seen_a_record and change_stream.resume_token is not None: - # if we're in this block, we're in MongoDB specifically - DocumentDB will have a None resume - # token here. If we take no action, the tap will remain open and idle until a message appears - # in the change stream, then it will yield that record and close. That's not ideal because it - # doesn't need to wait around for activity. It can just yield a "dummy" record with the resume - # token from the change stream, exit immediately, and then pick up processing the change stream - # from this point the next time the tap is run. So that's what we do. - yield { - "replication_key": change_stream.resume_token["_data"], - "object_id": None, - "document": None, - "operation_type": None, - "cluster_time": None, - "namespace": None, - } - has_seen_a_record = True - - if record is None and has_seen_a_record: - keep_open = False - if record is not None: - operation_type = record["operationType"] - if operation_type not in operation_types_allowlist: - continue - cluster_time: datetime = record["clusterTime"].as_datetime() - # fullDocument key is not present on delete events - if it is missing, fall back to documentKey - # instead. If that is missing, pass None/null to avoid raising an error. - document = record.get("fullDocument", record.get("documentKey", None)) - object_id: Optional[ObjectId] = document["_id"] if "_id" in document else None - parsed_record = { - "replication_key": record["_id"]["_data"], - "object_id": str(object_id) if object_id is not None else None, - "document": document, - "operation_type": operation_type, - "cluster_time": cluster_time.isoformat(), - "namespace": { - "database": record["ns"]["db"], - "collection": record["ns"]["coll"], - }, - } - if should_add_metadata: - parsed_record["_sdc_extracted_at"] = cluster_time - parsed_record["_sdc_batched_at"] = datetime.utcnow() - if operation_type == "delete": - parsed_record["_sdc_deleted_at"] = cluster_time - yield parsed_record - has_seen_a_record = True + if self.replication_method == REPLICATION_LOG_BASED: + return self._get_records_log_based(bookmark, should_add_metadata, collection) - else: - msg = ( - f"Unrecognized replication method {self.replication_method}. Only {REPLICATION_INCREMENTAL} and" - f" {REPLICATION_LOG_BASED} replication methods are supported." - ) - self.logger.critical(msg) - raise ValueError(msg) + msg = ( + f"Unrecognized replication method {self.replication_method}. Only {REPLICATION_INCREMENTAL} and" + f" {REPLICATION_LOG_BASED} replication methods are supported." + ) + self.logger.critical(msg) + raise ValueError(msg) diff --git a/tests/utils_test.py b/tests/utils_test.py index 1d614ba..c65cead 100644 --- a/tests/utils_test.py +++ b/tests/utils_test.py @@ -14,22 +14,50 @@ def test_that_invalid_setting_throws() -> None: get_resume_strategy(mongo_version, change_stream_resume_strategy) -def test_that_resume_after_is_returned_on_pre_4_0_mongo_version() -> None: +def test_that_resume_after_is_returned_on_mongo_3_6_if_start_after_is_set() -> None: """Test that resume_after is returned for MongoDB version 3.6 even though start_after was configured""" mongo_version: MongoVersion = (3, 6) change_stream_resume_strategy: str = "start_after" assert get_resume_strategy(mongo_version, change_stream_resume_strategy) == ResumeStrategy.RESUME_AFTER -def test_that_resume_after_is_returned_on_pre_4_0_mongo_version_2() -> None: +def test_that_resume_after_is_returned_on_mongo_3_6_if_start_at_operation_time_is_set() -> None: """Test that resume_after is returned for MongoDB version 3.6 even though start_at_operation_time was configured""" mongo_version: MongoVersion = (3, 6) change_stream_resume_strategy: str = "start_at_operation_time" assert get_resume_strategy(mongo_version, change_stream_resume_strategy) == ResumeStrategy.RESUME_AFTER -def test_that_resume_after_is_returned_on_pre_4_0_mongo_version_3() -> None: +def test_that_resume_after_is_returned_on_mongo_3_6() -> None: """Test that resume_after is returned for MongoDB version 3.6 when resume_after is configured""" mongo_version: MongoVersion = (3, 6) change_stream_resume_strategy: str = "resume_after" assert get_resume_strategy(mongo_version, change_stream_resume_strategy) == ResumeStrategy.RESUME_AFTER + + +def test_that_resume_after_is_allowed_on_mongo_4_0() -> None: + """Test that resume_after is returned for MongoDB version 3.6 when resume_after is configured""" + mongo_version: MongoVersion = (4, 0) + change_stream_resume_strategy: str = "resume_after" + assert get_resume_strategy(mongo_version, change_stream_resume_strategy) == ResumeStrategy.RESUME_AFTER + + +def test_that_resume_after_is_allowed_on_mongo_4_2() -> None: + """Test that resume_after is returned for MongoDB version 3.6 when resume_after is configured""" + mongo_version: MongoVersion = (4, 2) + change_stream_resume_strategy: str = "resume_after" + assert get_resume_strategy(mongo_version, change_stream_resume_strategy) == ResumeStrategy.RESUME_AFTER + + +def test_that_start_at_operation_time_is_allowed_on_mongo_4_0() -> None: + """Test that resume_after is returned for MongoDB version 3.6 when resume_after is configured""" + mongo_version: MongoVersion = (4, 0) + change_stream_resume_strategy: str = "start_at_operation_time" + assert get_resume_strategy(mongo_version, change_stream_resume_strategy) == ResumeStrategy.START_AT_OPERATION_TIME + + +def test_that_start_at_operation_time_is_allowed_on_mongo_4_2() -> None: + """Test that resume_after is returned for MongoDB version 3.6 when resume_after is configured""" + mongo_version: MongoVersion = (4, 2) + change_stream_resume_strategy: str = "start_at_operation_time" + assert get_resume_strategy(mongo_version, change_stream_resume_strategy) == ResumeStrategy.START_AT_OPERATION_TIME From 4f0b291fcf0eed14f195cfbbef6f5fdaf30ed8b8 Mon Sep 17 00:00:00 2001 From: Matt Menzenski Date: Thu, 15 Feb 2024 15:47:04 -0600 Subject: [PATCH 04/13] add mypy to precommit checks --- .pre-commit-config.yaml | 14 ++++-- poetry.lock | 107 +++------------------------------------- pyproject.toml | 3 +- tap_mongodb/streams.py | 9 ++-- tap_mongodb/types.py | 23 ++++----- tap_mongodb/utils.py | 7 ++- 6 files changed, 36 insertions(+), 127 deletions(-) diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 958bc03..4d5c963 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -2,7 +2,7 @@ # See https://pre-commit.com/hooks.html for more hooks repos: - repo: https://github.com/pre-commit/pre-commit-hooks - rev: v3.2.0 + rev: v4.5.0 hooks: - id: check-added-large-files - id: check-toml @@ -23,11 +23,11 @@ repos: - '2' - id: trailing-whitespace - repo: https://github.com/lyz-code/yamlfix.git - rev: 1.9.0 + rev: 1.16.0 hooks: - id: yamlfix - repo: https://github.com/adrienverge/yamllint.git - rev: v1.28.0 + rev: v1.35.0 hooks: - id: yamllint args: @@ -35,17 +35,21 @@ repos: - parsable - --strict - repo: https://github.com/charliermarsh/ruff-pre-commit - rev: v0.0.252 + rev: v0.2.1 hooks: - id: ruff args: - --fix - --exit-non-zero-on-fix - repo: https://github.com/psf/black - rev: 23.1.0 + rev: 24.2.0 hooks: - id: black language_version: python3 + - repo: https://github.com/pre-commit/mirrors-mypy + rev: v1.8.0 + hooks: + - id: mypy - repo: local hooks: - id: pylint diff --git a/poetry.lock b/poetry.lock index b834a0c..7d62d12 100644 --- a/poetry.lock +++ b/poetry.lock @@ -26,7 +26,6 @@ files = [ [package.dependencies] lazy-object-proxy = ">=1.4.0" -typed-ast = {version = ">=1.4.0,<2.0", markers = "implementation_name == \"cpython\" and python_version < \"3.8\""} typing-extensions = {version = ">=4.0.0", markers = "python_version < \"3.11\""} wrapt = [ {version = ">=1.11,<2", markers = "python_version < \"3.11\""}, @@ -45,9 +44,6 @@ files = [ {file = "attrs-23.1.0.tar.gz", hash = "sha256:6279836d581513a26f1bf235f9acd333bc9115683f14f7e8fae46c98fc50e015"}, ] -[package.dependencies] -importlib-metadata = {version = "*", markers = "python_version < \"3.8\""} - [package.extras] cov = ["attrs[tests]", "coverage[toml] (>=5.3)"] dev = ["attrs[docs,tests]", "pre-commit"] @@ -121,7 +117,6 @@ packaging = ">=22.0" pathspec = ">=0.9.0" platformdirs = ">=2" tomli = {version = ">=1.1.0", markers = "python_version < \"3.11\""} -typed-ast = {version = ">=1.4.2", markers = "python_version < \"3.8\" and implementation_name == \"cpython\""} typing-extensions = {version = ">=3.10.0.0", markers = "python_version < \"3.10\""} [package.extras] @@ -376,7 +371,6 @@ files = [ [package.dependencies] colorama = {version = "*", markers = "platform_system == \"Windows\""} -importlib-metadata = {version = "*", markers = "python_version < \"3.8\""} [[package]] name = "colorama" @@ -512,7 +506,6 @@ files = [ ] [package.dependencies] -importlib-metadata = {version = ">=1.1.0,<4.3", markers = "python_version < \"3.8\""} mccabe = ">=0.7.0,<0.8.0" pycodestyle = ">=2.9.0,<2.10.0" pyflakes = ">=2.5.0,<2.6.0" @@ -637,26 +630,6 @@ files = [ {file = "idna-3.4.tar.gz", hash = "sha256:814f528e8dead7d329833b91c5faa87d60bf71824cd12a7530b5526063d02cb4"}, ] -[[package]] -name = "importlib-metadata" -version = "4.2.0" -description = "Read metadata from Python packages" -category = "main" -optional = false -python-versions = ">=3.6" -files = [ - 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return self @property def is_sorted(self) -> bool: @@ -156,8 +155,6 @@ def _increment_stream_state(self, latest_record: dict[str, Any], *, context: dic check_sorted=self.check_sorted, ) - return self - def _generate_record_messages(self, record: dict) -> Generator[singer.RecordMessage, None, None]: """Write out a RECORD message. @@ -229,7 +226,7 @@ def _get_records_log_based( ) -> Iterable[dict]: """Return a generator of record-type dictionary objects when running in log-based replication mode.""" # pylint: disable=too-many-locals,too-many-branches,too-many-statements - change_stream_options = {"full_document": "updateLookup"} + change_stream_options: Dict[str, Union[str, Dict[str, str]]] = {"full_document": "updateLookup"} mongo_version: MongoVersion = self._connector.version change_stream_resume_strategy: str = self.config.get("change_stream_resume_strategy", "resume_after") resume_strategy: ResumeStrategy = get_resume_strategy(mongo_version, change_stream_resume_strategy) @@ -335,7 +332,7 @@ def _get_records_log_based( # fullDocument key is not present on delete events - if it is missing, fall back to documentKey # instead. If that is missing, pass None/null to avoid raising an error. document = record.get("fullDocument", record.get("documentKey", None)) - object_id: Optional[ObjectId] = document["_id"] if "_id" in document else None + object_id: Optional[ObjectId] = document["_id"] if document and "_id" in document else None parsed_record = { "replication_key": record["_id"]["_data"], "object_id": str(object_id) if object_id is not None else None, diff --git a/tap_mongodb/types.py b/tap_mongodb/types.py index 6843235..e7903a6 100644 --- a/tap_mongodb/types.py +++ b/tap_mongodb/types.py @@ -6,21 +6,22 @@ from typing import Optional, Tuple from bson.objectid import ObjectId -from typing_extensions import Self -try: - from typing import TypeAlias # pylint: disable=ungrouped-imports +if sys.version_info < (3, 10): + from typing_extensions import TypeAlias - MongoVersion: TypeAlias = Tuple[int, int] -except ImportError: - TypeAlias = None MongoVersion = Tuple[int, int] +else: + from typing import TypeAlias # pylint: disable=ungrouped-imports + MongoVersion: TypeAlias = Tuple[int, int] -if sys.version_info[:2] < (3, 11): +if sys.version_info < (3, 11): from strenum import StrEnum + from typing_extensions import Self else: from enum import StrEnum + from typing import Self class ResumeStrategy(StrEnum): @@ -75,7 +76,7 @@ def object_id(self) -> ObjectId: return ObjectId.from_datetime(self._datetime) return ObjectId(self._object_id) - def __str__(self): + def __str__(self) -> str: """Return a string representation of the IncrementalId.""" datetime_part: str = self._datetime.isoformat() if self._datetime else "" object_id_part: str = f"{self._separator}{self._object_id}" if self._object_id else "" @@ -84,12 +85,12 @@ def __str__(self): @classmethod def from_string(cls, id_string: str) -> Self: """Create an IncrementalId instance from a string.""" - matched: re.Match = re.match(IncrementalId.PATTERN, id_string) + matched: Optional[re.Match[str]] = re.match(IncrementalId.PATTERN, id_string) if not matched: raise ValueError("Invalid IncrementalId string") datetime_part = datetime.fromisoformat(matched["dt"]) object_id_part = matched["oid"] if matched["oid"] else None - return IncrementalId(datetime_part, object_id_part) + return IncrementalId(datetime_part, object_id_part) # type: ignore[return-value] @classmethod def from_object_id(cls, object_id: ObjectId) -> Self: @@ -98,4 +99,4 @@ def from_object_id(cls, object_id: ObjectId) -> Self: raise ValueError("ObjectId argument cannot be None") datetime_part = object_id.generation_time object_id_part = str(object_id) - return IncrementalId(datetime_part, object_id_part) + return IncrementalId(datetime_part, object_id_part) # type: ignore[return-value] diff --git a/tap_mongodb/utils.py b/tap_mongodb/utils.py index c48ebd3..d8fd68a 100644 --- a/tap_mongodb/utils.py +++ b/tap_mongodb/utils.py @@ -1,6 +1,5 @@ """Utility module containing some functions that don't fit well in other modules.""" - from bson.objectid import ObjectId from tap_mongodb.types import IncrementalId, MongoVersion, ResumeStrategy @@ -19,10 +18,10 @@ def get_resume_strategy(mongo_version: MongoVersion, change_stream_resume_strate if mongo_version < (3, 6): raise ValueError("unsupported version of MongoDB") if (4, 0) <= mongo_version and change_stream_resume_strategy == "start_at_operation_time": - return ResumeStrategy.START_AT_OPERATION_TIME + return ResumeStrategy.START_AT_OPERATION_TIME # type: ignore[return-value] if (4, 2) <= mongo_version and change_stream_resume_strategy == "start_after": - return ResumeStrategy.START_AFTER - return ResumeStrategy.RESUME_AFTER + return ResumeStrategy.START_AFTER # type: ignore[return-value] + return ResumeStrategy.RESUME_AFTER # type: ignore[return-value] def to_object_id(replication_key_value: str) -> ObjectId: From 48e9610c2c3bdba0dc157f3c3768d697051f9689 Mon Sep 17 00:00:00 2001 From: Matt Menzenski Date: Thu, 15 Feb 2024 15:56:59 -0600 Subject: [PATCH 05/13] add debugging logging config file --- debug-logging.yaml | 17 +++++++++++++++++ 1 file changed, 17 insertions(+) create mode 100644 debug-logging.yaml diff --git a/debug-logging.yaml b/debug-logging.yaml new file mode 100644 index 0000000..9ccae05 --- /dev/null +++ b/debug-logging.yaml @@ -0,0 +1,17 @@ +version: 1 +disable_existing_loggers: false +formatters: + metrics: + format: '{asctime} {levelname} {message}' + style: '{' +handlers: + metrics: + class: logging.FileHandler + formatter: metrics + filename: metrics.log +loggers: + singer_sdk.metrics: + level: INFO + handlers: + - metrics + propagate: true From d3aacb9cd29ebfcf4edf771bd108ec0259719bb9 Mon Sep 17 00:00:00 2001 From: Matt Menzenski Date: Thu, 15 Feb 2024 15:57:12 -0600 Subject: [PATCH 06/13] update sdk version --- poetry.lock | 1556 ++++++++++++++++++++++++++---------------------- pyproject.toml | 4 +- 2 files changed, 841 insertions(+), 719 deletions(-) diff --git a/poetry.lock b/poetry.lock index 7d62d12..1901bdd 100644 --- a/poetry.lock +++ b/poetry.lock 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insertions(+), 78 deletions(-) diff --git a/pyproject.toml b/pyproject.toml index bc3d627..52e6ec5 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -67,6 +67,10 @@ quote_basic_values = false quote_keys_and_basic_values = false [tool.ruff] +line-length = 120 +target-version = "py311" + +[tool.ruff.lint] select = [ "E", "F", @@ -78,10 +82,8 @@ exclude = [ ".secrets", "output", ] -line-length = 120 -target-version = "py311" -[tool.ruff.isort] +[tool.ruff.lint.isort] known-third-party = [ "pymongo", "singer_sdk", diff --git a/tap_mongodb/streams.py b/tap_mongodb/streams.py index 2f03ada..7f1a3e7 100644 --- a/tap_mongodb/streams.py +++ b/tap_mongodb/streams.py @@ -170,7 +170,7 @@ def _generate_record_messages(self, record: dict) -> Generator[singer.RecordMess Record message objects. """ extracted_at: DateTime = record.pop("_sdc_extracted_at", utc_now()) - pop_deselected_record_properties(record, self.schema, self.mask, self.logger) + pop_deselected_record_properties(record, self.schema, self.mask) record = conform_record_data_types( stream_name=self.name, record=record, @@ -243,6 +243,7 @@ def _get_records_log_based( try: change_stream = collection.watch(**change_stream_options) + self.logger.info("Opened change stream") except OperationFailure as operation_failure: if ( operation_failure.code == 136 @@ -273,84 +274,88 @@ def _get_records_log_based( else: self.logger.critical(f"operation_failure on collection.watch: {operation_failure}") raise operation_failure - except Exception as exception: self.logger.critical(exception) raise exception - with change_stream: - while change_stream.alive and keep_open: - record: Optional[_DocumentType] - try: - record = change_stream.try_next() - except OperationFailure as operation_failure: - if ( - resume_strategy == ResumeStrategy.RESUME_AFTER - and operation_failure.code == 286 - and "as the resume point may no longer be in the oplog." in operation_failure.details["errmsg"] - ): - self.logger.warning(f"operation_failure on try_next: {operation_failure}") - record = None - else: - self.logger.critical(f"operation_failure on try_next: {operation_failure}") - raise operation_failure - # if we have processed any records, a None record means that we've caught up to the end of the - # stream - set keep_open to False so that the change stream is closed and the tap exits. - # if no records have been processed, a None record means that there has been no activity in the - # collection since the change stream was opened. MongoDB and DocumentDB have different behavior here - # (MongoDB change streams have a valid/resumable resume_token immediately, while DocumentDB change - # streams have a None resume_token until there has been an event published to the change stream). - # The intent of the following code is the following: - # - If a change stream is opened and there are no records, hold it open until a record appears, - # then yield that record (whose _id is set to the change stream's resume token, so that the - # change stream can be resumed from this point by a later running of the tap). - # - If a change stream is opened and there is at least one record, yield all records - if record is None and not has_seen_a_record and change_stream.resume_token is not None: - # if we're in this block, we're in MongoDB specifically - DocumentDB will have a None resume - # token here. If we take no action, the tap will remain open and idle until a message appears - # in the change stream, then it will yield that record and close. That's not ideal because it - # doesn't need to wait around for activity. It can just yield a "dummy" record with the resume - # token from the change stream, exit immediately, and then pick up processing the change stream - # from this point the next time the tap is run. So that's what we do. - yield { - "replication_key": change_stream.resume_token["_data"], - "object_id": None, - "document": None, - "operation_type": None, - "cluster_time": None, - "namespace": None, - } - has_seen_a_record = True - - if record is None and has_seen_a_record: - keep_open = False - if record is not None: - operation_type = record["operationType"] - if operation_type not in operation_types_allowlist: - continue - cluster_time: datetime = record["clusterTime"].as_datetime() - # fullDocument key is not present on delete events - if it is missing, fall back to documentKey - # instead. If that is missing, pass None/null to avoid raising an error. - document = record.get("fullDocument", record.get("documentKey", None)) - object_id: Optional[ObjectId] = document["_id"] if document and "_id" in document else None - parsed_record = { - "replication_key": record["_id"]["_data"], - "object_id": str(object_id) if object_id is not None else None, - "document": document, - "operation_type": operation_type, - "cluster_time": cluster_time.isoformat(), - "namespace": { - "database": record["ns"]["db"], - "collection": record["ns"]["coll"], - }, - } - if should_add_metadata: - parsed_record["_sdc_extracted_at"] = cluster_time - parsed_record["_sdc_batched_at"] = datetime.utcnow() - if operation_type == "delete": - parsed_record["_sdc_deleted_at"] = cluster_time - yield parsed_record - has_seen_a_record = True + while change_stream.alive and keep_open: + record: Optional[_DocumentType] + try: + record = change_stream.try_next() + except OperationFailure as operation_failure: + if ( + resume_strategy == ResumeStrategy.RESUME_AFTER + and operation_failure.code == 286 + and "as the resume point may no longer be in the oplog." in operation_failure.details["errmsg"] + ): + self.logger.warning("Unable to resume change stream from resume token. Resetting resume token.") + change_stream_options.pop("resume_after", None) + change_stream = collection.watch(**change_stream_options) + record = None + else: + self.logger.critical(f"operation_failure on try_next: {operation_failure}") + raise operation_failure + # if we have processed any records, a None record means that we've caught up to the end of the + # stream - set keep_open to False so that the change stream is closed and the tap exits. + # if no records have been processed, a None record means that there has been no activity in the + # collection since the change stream was opened. MongoDB and DocumentDB have different behavior here + # (MongoDB change streams have a valid/resumable resume_token immediately, while DocumentDB change + # streams have a None resume_token until there has been an event published to the change stream). + # The intent of the following code is the following: + # - If a change stream is opened and there are no records, hold it open until a record appears, + # then yield that record (whose _id is set to the change stream's resume token, so that the + # change stream can be resumed from this point by a later running of the tap). + # - If a change stream is opened and there is at least one record, yield all records + if record is None and not has_seen_a_record and change_stream.resume_token is not None: + # if we're in this block, we're in MongoDB specifically - DocumentDB will have a None resume + # token here. If we take no action, the tap will remain open and idle until a message appears + # in the change stream, then it will yield that record and close. That's not ideal because it + # doesn't need to wait around for activity. It can just yield a "dummy" record with the resume + # token from the change stream, exit immediately, and then pick up processing the change stream + # from this point the next time the tap is run. So that's what we do. + yield { + "replication_key": change_stream.resume_token["_data"], + "object_id": None, + "document": None, + "operation_type": None, + "cluster_time": None, + "namespace": None, + } + has_seen_a_record = True + + if record is None and has_seen_a_record: + self.logger.info( + "Reached the end of the change stream after consuming at least one record, closing it." + ) + keep_open = False + if record is not None: + operation_type = record["operationType"] + if operation_type not in operation_types_allowlist: + self.logger.debug(f"Skipping record of operationType {operation_type} which is not in allowlist") + continue + cluster_time: datetime = record["clusterTime"].as_datetime() + # fullDocument key is not present on delete events - if it is missing, fall back to documentKey + # instead. If that is missing, pass None/null to avoid raising an error. + document = record.get("fullDocument", record.get("documentKey", None)) + object_id: Optional[ObjectId] = document["_id"] if document and "_id" in document else None + parsed_record = { + "replication_key": record["_id"]["_data"], + "object_id": str(object_id) if object_id is not None else None, + "document": document, + "operation_type": operation_type, + "cluster_time": cluster_time.isoformat(), + "namespace": { + "database": record["ns"]["db"], + "collection": record["ns"]["coll"], + }, + } + if should_add_metadata: + parsed_record["_sdc_extracted_at"] = cluster_time + parsed_record["_sdc_batched_at"] = datetime.utcnow() + if operation_type == "delete": + parsed_record["_sdc_deleted_at"] = cluster_time + yield parsed_record + has_seen_a_record = True def get_records(self, context: dict | None) -> Iterable[dict]: """Return a generator of record-type dictionary objects.""" From fa6ad4cd60a49cccecf05f043c67ff797074f6f7 Mon Sep 17 00:00:00 2001 From: Matt Menzenski Date: Thu, 15 Feb 2024 17:22:40 -0600 Subject: [PATCH 08/13] delete logging config --- debug-logging.yaml | 17 ----------------- 1 file changed, 17 deletions(-) delete mode 100644 debug-logging.yaml diff --git a/debug-logging.yaml b/debug-logging.yaml deleted file mode 100644 index 9ccae05..0000000 --- a/debug-logging.yaml +++ /dev/null @@ -1,17 +0,0 @@ -version: 1 -disable_existing_loggers: false -formatters: - metrics: - format: '{asctime} {levelname} {message}' - style: '{' -handlers: - metrics: - class: logging.FileHandler - formatter: metrics - filename: metrics.log -loggers: - singer_sdk.metrics: - level: INFO - handlers: - - metrics - propagate: true From 32f6a2a7817da914966da06975356c40ed9b4323 Mon Sep 17 00:00:00 2001 From: Matt Menzenski Date: Thu, 15 Feb 2024 17:28:40 -0600 Subject: [PATCH 09/13] delete mongodb testing things, they didn't work with change streams --- compose.yaml | 54 ------------------------------------------ mongodb-init.sh | 46 ----------------------------------- mongodb-replicaset.key | 16 ------------- 3 files changed, 116 deletions(-) delete mode 100644 compose.yaml delete mode 100755 mongodb-init.sh delete mode 100644 mongodb-replicaset.key diff --git a/compose.yaml b/compose.yaml deleted file mode 100644 index 0395bb6..0000000 --- a/compose.yaml +++ /dev/null @@ -1,54 +0,0 @@ -version: '3' -services: - # replica set primary - tap-mongodb-test-db-1: - container_name: tap-mongodb-test-db-1 - image: mongo:4.4 - depends_on: - - tap-mongodb-test-db-2 - - tap-mongodb-test-db-3 - environment: - MONGO_INITDB_ROOT_USERNAME: ${MONGO_INITDB_ROOT_USERNAME} - MONGO_INITDB_ROOT_PASSWORD: ${MONGO_INITDB_ROOT_PASSWORD} - ports: - - 27000:27000 - volumes: - - ./mongodb-replicaset.key:/data/replica.key - restart: always - command: mongod --bind_ip all --replSet rs0 --oplogSize 1 --quiet --keyFile /data/replica.key --port 27000 - # replica set secondary - tap-mongodb-test-db-2: - container_name: tap-mongodb-test-db-2 - image: mongo:4.4 - expose: - - 27000 - volumes: - - ./mongodb-replicaset.key:/data/replica.key - restart: always - command: mongod --bind_ip all --replSet rs0 --oplogSize 1 --quiet --keyFile /data/replica.key --port 27000 - # replica set arbiter - tap-mongodb-test-db-3: - container_name: tap-mongodb-test-db-3 - image: mongo:4.4 - expose: - - 27000 - volumes: - - ./mongodb-replicaset.key:/data/replica.key - restart: always - command: mongod --bind_ip all --replSet rs0 --oplogSize 1 --quiet --keyFile /data/replica.key --port 27000 - tap-mongodb-test-db-init: - container_name: tap-mongodb-test-db-init - image: mongo:4.4 - depends_on: - - tap-mongodb-test-db-1 - - tap-mongodb-test-db-2 - - tap-mongodb-test-db-3 - environment: - MONGO_INITDB_ROOT_USERNAME: ${MONGO_INITDB_ROOT_USERNAME} - MONGO_INITDB_ROOT_PASSWORD: ${MONGO_INITDB_ROOT_PASSWORD} - volumes: - - ./mongodb-init.sh:/scripts/mongodb_rs_init.sh - restart: on-failure - entrypoint: - - /bin/bash - - /scripts/mongodb_rs_init.sh diff --git a/mongodb-init.sh b/mongodb-init.sh deleted file mode 100755 index 1948344..0000000 --- a/mongodb-init.sh +++ /dev/null @@ -1,46 +0,0 @@ -#!/bin/bash - -m1=tap-mongodb-test-db-1 -m2=tap-mongodb-test-db-2 -m3=tap-mongodb-test-db-2 -port=${PORT:-27000} - -echo "###### Waiting for ${m1} instance startup.." -until mongosh --host ${m1}:${port} --eval 'quit(db.runCommand({ ping: 1 }).ok ? 0 : 2)' &>/dev/null; do - printf '.' - sleep 1 -done -echo "###### Working ${m1} instance found, initiating user setup & initializing rs setup.." - -# setup user + pass and initialize replica sets -mongosh --host ${m1}:${port} < Date: Thu, 15 Feb 2024 18:23:33 -0600 Subject: [PATCH 10/13] remove start at operation time --- meltano.yml | 36 ++++++++++++------------------------ tap_mongodb/tap.py | 28 +++++++++++----------------- tap_mongodb/types.py | 1 - tap_mongodb/utils.py | 3 --- tests/utils_test.py | 14 -------------- 5 files changed, 23 insertions(+), 59 deletions(-) diff --git a/meltano.yml b/meltano.yml index f9f47a8..ee3f1e4 100644 --- a/meltano.yml +++ b/meltano.yml @@ -90,6 +90,18 @@ plugins: - insert - replace - update + - name: change_stream_resume_strategy + kind: string + description: | + Only used when tap is run in log-based replication mode. This setting specifies how the tap creates a + new change stream on runs after the first. The default is `resume_after` (see + https://www.mongodb.com/docs/manual/changeStreams/#resumeafter-for-change-streams), which was added + in MongoDB 3.6 when the ChangeStream API was introduced. The `start_after` setting (see + https://www.mongodb.com/docs/manual/changeStreams/#startafter-for-change-streams) requires MongoDB + version 4.2 or greater. You may switch back and forth between `resume_after` and `start_after` + settings (provided the MongoDB version is at least 4.2) freely. If the value provided to this setting + is not compatible with the MongoDB version in use, this setting defaults to `resume_after`. + value: resume_after - name: stream_maps kind: object description: | @@ -115,30 +127,6 @@ plugins: '*': replication-key: replication_key replication-method: INCREMENTAL - - name: tap-test-service-backfill - inherit_from: tap-mongodb - config: - mongodb_connection_string: mongodb://admin:password@localhost:27000/ - database: test_db - prefix: backfill_test_db - select: - - backfill_test_db_user.* - metadata: - '*': - replication-key: replication_key - replication-method: INCREMENTAL - - name: tap-test-service-streaming - inherit_from: tap-mongodb - config: - mongodb_connection_string: mongodb://admin:password@localhost:27000/ - database: test_db - prefix: streaming_test_db - select: - - streaming_test_db_user.* - metadata: - '*': - replication-key: replication_key - replication-method: LOG_BASED loaders: - name: target-jsonl variant: andyh1203 diff --git a/tap_mongodb/tap.py b/tap_mongodb/tap.py index 98ab61e..e679f45 100644 --- a/tap_mongodb/tap.py +++ b/tap_mongodb/tap.py @@ -4,7 +4,7 @@ import json import sys -from typing import Any, Optional +from typing import Any from urllib.parse import quote_plus from singer_sdk import Tap @@ -51,7 +51,7 @@ class TapMongoDB(Tap): "String (serialized JSON object) with keys 'username', 'password', 'engine', 'host', 'port', " "'dbClusterIdentifier' or 'dbName', 'ssl'. See example at " # pylint: disable-next=line-too-long - "https://docs.aws.amazon.com/secretsmanager/latest/userguide/reference_secret_json_structure.html#reference_secret_json_structure_docdb" # noqa: E501 + "https://docs.aws.amazon.com/secretsmanager/latest/userguide/reference_secret_json_structure.html#reference_secret_json_structure_docdb" ". The password from this JSON object will be url-encoded by the tap before opening the database " "connection." ), @@ -121,7 +121,7 @@ class TapMongoDB(Tap): description=( "In DocumentDB (unlike MongoDB), change streams must be enabled specifically (see " # pylint: disable-next=line-too-long - "https://docs.aws.amazon.com/documentdb/latest/developerguide/change_streams.html#change_streams-enabling" # noqa: E501 + "https://docs.aws.amazon.com/documentdb/latest/developerguide/change_streams.html#change_streams-enabling" "). If attempting to open a change stream against a collection on which change streams have not been " "enabled, an OperationFailure error will be raised. If this property is set to True, when this error " "is seen, the tap will execute an admin command to enable change streams and then retry the read " @@ -170,23 +170,17 @@ class TapMongoDB(Tap): "https://www.mongodb.com/docs/manual/changeStreams/#resumeafter-for-change-streams), which was added " "in MongoDB 3.6 when the ChangeStream API was introduced. The `start_after` setting (see " "https://www.mongodb.com/docs/manual/changeStreams/#startafter-for-change-streams) requires MongoDB " - "version 4.2 or greater. The `start_at_operation_time` setting (see " - "https://www.mongodb.com/docs/manual/changeStreams/#footnote-start-time) requires MongoDB version 4.0 " - "or greater. Note that `resume_after` and `start_after` will use a BSON resume token as the " - "replication key value, while `start_at_operation_time` will use an ISO 8601 datetime string. You may " - "thus switch back and forth between `resume_after` and `start_after` settings (provided the MongoDB" - "version is at least 4.2) freely, but you will need to do a full refresh and/or delete the stream " - "state before changing the setting to `start_at_operation_time`. If the value provided to this setting " + "version 4.2 or greater. You may switch back and forth between `resume_after` and `start_after` " + "settings (provided the MongoDB version is at least 4.2) freely. If the value provided to this setting " "is not compatible with the MongoDB version in use, this setting defaults to `resume_after`." ), allowed_values=[ "resume_after", "start_after", - "start_at_operation_time", ], ), ).to_dict() - config_jsonschema["properties"]["operation_types"]["items"]["enum"] = [ + config_jsonschema["properties"]["operation_types"]["items"]["enum"] = [ # noqa: RUF012 "create", "createIndexes", "delete", @@ -202,16 +196,16 @@ class TapMongoDB(Tap): "update", ] - def _get_mongo_connection_string(self) -> Optional[str]: + def _get_mongo_connection_string(self) -> str: """Get configured MongoDB connection URI.""" documentdb_credential_json_string = self.config.get("documentdb_credential_json_string", None) if documentdb_credential_json_string is not None: self.logger.debug("Using documentdb_credential_json_string") documentdb_credential_json: dict[str, Any] = json.loads(documentdb_credential_json_string) - username: str = documentdb_credential_json.get("username") - password: str = documentdb_credential_json.get("password") - host: str = documentdb_credential_json.get("host") - port: int = documentdb_credential_json.get("port") + username: str = documentdb_credential_json.get("username") # type: ignore[assignment] + password: str = documentdb_credential_json.get("password") # type: ignore[assignment] + host: str = documentdb_credential_json.get("host") # type: ignore[assignment] + port: int = documentdb_credential_json.get("port") # type: ignore[assignment] connection_string = f"mongodb://{quote_plus(username)}:{quote_plus(password)}@{host}:{port}" return connection_string diff --git a/tap_mongodb/types.py b/tap_mongodb/types.py index e7903a6..115cf6a 100644 --- a/tap_mongodb/types.py +++ b/tap_mongodb/types.py @@ -29,7 +29,6 @@ class ResumeStrategy(StrEnum): RESUME_AFTER = "resume_after" START_AFTER = "start_after" - START_AT_OPERATION_TIME = "start_at_operation_time" class IncrementalId: diff --git a/tap_mongodb/utils.py b/tap_mongodb/utils.py index d8fd68a..2b407ac 100644 --- a/tap_mongodb/utils.py +++ b/tap_mongodb/utils.py @@ -11,14 +11,11 @@ def get_resume_strategy(mongo_version: MongoVersion, change_stream_resume_strate if change_stream_resume_strategy not in { "resume_after", "start_after", - "start_at_operation_time", }: raise ValueError("unsupported change_stream_resume_strategy setting") # validate that the mongodb version is at least 3.6 if mongo_version < (3, 6): raise ValueError("unsupported version of MongoDB") - if (4, 0) <= mongo_version and change_stream_resume_strategy == "start_at_operation_time": - return ResumeStrategy.START_AT_OPERATION_TIME # type: ignore[return-value] if (4, 2) <= mongo_version and change_stream_resume_strategy == "start_after": return ResumeStrategy.START_AFTER # type: ignore[return-value] return ResumeStrategy.RESUME_AFTER # type: ignore[return-value] diff --git a/tests/utils_test.py b/tests/utils_test.py index c65cead..d31401d 100644 --- a/tests/utils_test.py +++ b/tests/utils_test.py @@ -47,17 +47,3 @@ def test_that_resume_after_is_allowed_on_mongo_4_2() -> None: mongo_version: MongoVersion = (4, 2) change_stream_resume_strategy: str = "resume_after" assert get_resume_strategy(mongo_version, change_stream_resume_strategy) == ResumeStrategy.RESUME_AFTER - - -def test_that_start_at_operation_time_is_allowed_on_mongo_4_0() -> None: - """Test that resume_after is returned for MongoDB version 3.6 when resume_after is configured""" - mongo_version: MongoVersion = (4, 0) - change_stream_resume_strategy: str = "start_at_operation_time" - assert get_resume_strategy(mongo_version, change_stream_resume_strategy) == ResumeStrategy.START_AT_OPERATION_TIME - - -def test_that_start_at_operation_time_is_allowed_on_mongo_4_2() -> None: - """Test that resume_after is returned for MongoDB version 3.6 when resume_after is configured""" - mongo_version: MongoVersion = (4, 2) - change_stream_resume_strategy: str = "start_at_operation_time" - assert get_resume_strategy(mongo_version, change_stream_resume_strategy) == ResumeStrategy.START_AT_OPERATION_TIME From 650ec3053292c743a218143aa938978c1b22f882 Mon Sep 17 00:00:00 2001 From: Matt Menzenski Date: Thu, 15 Feb 2024 18:26:19 -0600 Subject: [PATCH 11/13] rm seed utils --- tests/utilities/__init__.py | 0 tests/utilities/seed.py | 74 ------------------------------------- 2 files changed, 74 deletions(-) delete mode 100644 tests/utilities/__init__.py delete mode 100644 tests/utilities/seed.py diff --git a/tests/utilities/__init__.py b/tests/utilities/__init__.py deleted file mode 100644 index e69de29..0000000 diff --git a/tests/utilities/seed.py b/tests/utilities/seed.py deleted file mode 100644 index f4f931a..0000000 --- a/tests/utilities/seed.py +++ /dev/null @@ -1,74 +0,0 @@ -"""Utility module that tests may use to seed a MongoDB database in order to test tap-mongodb behavior.""" - - -import os -from dataclasses import asdict, dataclass, field -from datetime import datetime, timezone -from typing import List, Optional -from uuid import uuid4 - -from loguru import logger -from pymongo import MongoClient -from pymongo.collection import Collection -from pymongo.database import Database -from pymongo.results import InsertOneResult - - -@dataclass -class User: # pylint: disable=too-many-instance-attributes - """Generic User model containing members with a mix of data types.""" - - first_name: str - last_name: str - age: int - created_at: datetime = datetime.now(timezone.utc) - updated_at: datetime = datetime.now(timezone.utc) - deleted: bool = False - user_id: str = str(uuid4()) - hobbies: List[str] = field(default_factory=list) - - -def insert_user(collection: Collection, user: User) -> User: - """Insert the provided User record into the provided Collection.""" - now: datetime = datetime.now(timezone.utc) - user.created_at = now - user.updated_at = now - result: InsertOneResult = collection.insert_one(asdict(user)) - logger.info(f"Inserted User {user.id}, resulting _id {result.inserted_id}") - return user - - -def update_user(collection: Collection, user_id: str, user: User) -> User: # pylint: disable=unused-argument - """Update the provided User record in the provided Collection.""" - - -def get_user(collection: Collection, user_id: str) -> Optional[User]: # pylint: disable=unused-argument - """Return one User by id from the provided Collection.""" - - -def delete_user(collection: Collection, user_id: str) -> User: # pylint: disable=unused-argument - """Delete (soft-delete) one User by id from the provided Collection.""" - - -def get_collection() -> Collection: - """Returns a MongoDB Collection based on configured settings.""" - connection_string: str = os.getenv("TAP_MONGODB_TEST_CONNECTION_STRING") - if not connection_string: - raise ValueError("connection_string must be provided") - database_name: str = "test_db" - collection_name: str = "User" - client: MongoClient = MongoClient(connection_string) - database: Database = client.get_database(database_name) - collection: Collection = database.get_collection(collection_name) - return collection - - -def main() -> None: - """Run a series of seed operations on a MongoDB database..""" - collection: Collection = get_collection() - user: User = User(first_name="Ted", last_name="Lasso", age=48, hobbies=["football"]) - insert_user(collection, user) - - -if __name__ == "__main__": - main() From c4335e5af6dbc8e6afb04ce9587944f071129c93 Mon Sep 17 00:00:00 2001 From: Matt Menzenski Date: Thu, 15 Feb 2024 18:32:48 -0600 Subject: [PATCH 12/13] bump version --- poetry.lock | 12 ++++++------ pyproject.toml | 2 +- 2 files changed, 7 insertions(+), 7 deletions(-) diff --git a/poetry.lock b/poetry.lock index 1901bdd..c36d01a 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1757,14 +1757,14 @@ files = [ [[package]] name = "singer-sdk" -version = "0.35.0" +version = "0.35.1" description = "A framework for building Singer taps" category = "main" optional = false python-versions = ">=3.8" files = [ - {file = "singer_sdk-0.35.0-py3-none-any.whl", hash = "sha256:0f56be58655708dd97df4b892ad86bc74cc7a96c360bf4d22362391d0668b8be"}, - {file = "singer_sdk-0.35.0.tar.gz", hash = "sha256:3e4048a0e2aaef080acff2bca1d27a0dafcf24684f763cc46ed2b1a0c6970fd7"}, + {file = "singer_sdk-0.35.1-py3-none-any.whl", hash = "sha256:ce74509f4e330b722dd27c70e164e594303898e974faba4dad4aede0e2de1c02"}, + {file = "singer_sdk-0.35.1.tar.gz", hash = "sha256:25e0bfb7d62c2d33098b92c538c01d384d0bc9d79221a8b92318dc2ff45d32c2"}, ] [package.dependencies] @@ -1782,7 +1782,7 @@ jsonschema = ">=4.16.0" packaging = ">=23.1" pendulum = ">=2.1.0,<4" PyJWT = ">=2.4,<3.0" -pytest = {version = ">=7.2.1", optional = true, markers = "extra == \"testing\""} +pytest = {version = ">=7.2.1", optional = true, markers = "extra == \"docs\" or extra == \"testing\""} pytest-durations = {version = ">=1.2.0", optional = true, markers = "extra == \"testing\""} python-dateutil = ">=2.8.2" python-dotenv = ">=0.20" @@ -1796,8 +1796,8 @@ typing-extensions = ">=4.5.0" urllib3 = ">=1.26,<2" [package.extras] -docs = ["furo (>=2022.12.7)", "myst-parser (>=1)", "sphinx (>=4.5)", "sphinx-autobuild (>=2021.3.14)", "sphinx-copybutton (>=0.3.1)", "sphinx-inline-tabs (>=2023.4.21)", "sphinx-notfound-page (>=1.0.0)", "sphinx-reredirects (>=0.1.1)"] -faker = ["faker (>=22.5,<23.0)"] +docs = ["furo (>=2022.12.7)", "myst-parser (>=1)", "pytest (>=7.2.1)", "sphinx (>=4.5)", "sphinx-autobuild (>=2021.3.14)", "sphinx-copybutton (>=0.3.1)", "sphinx-inline-tabs (>=2023.4.21)", "sphinx-notfound-page (>=1.0.0)", "sphinx-reredirects (>=0.1.1)"] +faker = ["faker (>=22.5,<24.0)"] parquet = ["numpy (>=1.22)", "numpy (>=1.22,<1.25)", "pyarrow (>=13)"] s3 = ["fs-s3fs (>=1.1.1)"] testing = ["pytest (>=7.2.1)", "pytest-durations (>=1.2.0)"] diff --git a/pyproject.toml b/pyproject.toml index 52e6ec5..606da4e 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "tap-mongodb" -version = "2.5.0" +version = "2.6.0" description = "`tap-mongodb` is a Singer tap for MongoDB and AWS DocumentDB, built with the Meltano Singer SDK." readme = "README.md" authors = ["Matt Menzenski"] From b0e253a7c5c55199b79de5390b99f7ce192ab0a8 Mon Sep 17 00:00:00 2001 From: Matt Menzenski Date: Thu, 15 Feb 2024 18:36:23 -0600 Subject: [PATCH 13/13] remove backports cached property if we're on 3.8+ now --- poetry.lock | 14 +------------- pyproject.toml | 1 - tap_mongodb/tap.py | 7 +------ 3 files changed, 2 insertions(+), 20 deletions(-) diff --git a/poetry.lock b/poetry.lock index c36d01a..333b4a2 100644 --- a/poetry.lock +++ b/poetry.lock @@ -59,18 +59,6 @@ files = [ {file = "backoff-2.2.1.tar.gz", hash = "sha256:03f829f5bb1923180821643f8753b0502c3b682293992485b0eef2807afa5cba"}, ] -[[package]] -name = "backports-cached-property" -version = "1.0.2" -description = "cached_property() - computed once per instance, cached as attribute" -category = "main" -optional = false -python-versions = ">=3.6.0" -files = [ - {file = "backports.cached-property-1.0.2.tar.gz", hash = "sha256:9306f9eed6ec55fd156ace6bc1094e2c86fae5fb2bf07b6a9c00745c656e75dd"}, - {file = "backports.cached_property-1.0.2-py3-none-any.whl", hash = "sha256:baeb28e1cd619a3c9ab8941431fe34e8490861fb998c6c4590693d50171db0cc"}, -] - [[package]] name = "backports-datetime-fromisoformat" version = "2.0.1" @@ -2033,4 +2021,4 @@ s3 = ["fs-s3fs"] [metadata] lock-version = "2.0" python-versions = "<3.12,>=3.8" -content-hash = "68c17388b62eb49f534a6f6c0571756b674e5c8be8a8ecb655a79986d168e52e" +content-hash = "12bb28c9df6d137fadb8db0cc22f15798064502fb50d9f2416ae9e5c3660412d" diff --git a/pyproject.toml b/pyproject.toml index 606da4e..da131ff 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -18,7 +18,6 @@ python = "<3.12,>=3.8" singer-sdk = { version = "^0.35.0" } fs-s3fs = { version = "^1.1.1", optional = true } pymongo = "^4.4.1" -"backports.cached-property" = { version = "^1.0.2" } strenum = "^0.4.15" typing-extensions = {version = "^4.9.0", python = "<3.10"} diff --git a/tap_mongodb/tap.py b/tap_mongodb/tap.py index e679f45..9363e5e 100644 --- a/tap_mongodb/tap.py +++ b/tap_mongodb/tap.py @@ -3,7 +3,7 @@ from __future__ import annotations import json -import sys +from functools import cached_property from typing import Any from urllib.parse import quote_plus @@ -13,11 +13,6 @@ from tap_mongodb.connector import MongoDBConnector from tap_mongodb.streams import MongoDBCollectionStream -if sys.version_info[:2] >= (3, 7): - from backports.cached_property import cached_property -else: - from functools import cached_property - class TapMongoDB(Tap): """mongodb tap class."""