Use github.actor to store and retrieve container

Author: twsearle

.github/workflows/build_ci_image.yml

@@ -12,7 +12,7 @@ on:
 # workflow builds.
 env:
   REGISTRY: ghcr.io
-  IMAGE_NAME: darth/orca-jedi/ci-almalinux9
+  IMAGE_NAME: ${{ github.actor }}/orca-jedi/ci-almalinux9
 
 jobs:
   build-and-push-image:
@@ -36,7 +36,7 @@ jobs:
         with:
           registry: ${{ env.REGISTRY }}
           username: ${{ github.actor }}
-          password: ${{ secrets.GH_PAT }}
+          password: ${{ secrets.GITHUB_TOKEN }}
       # This step uses
       # [docker/metadata-action](https://github.com/docker/metadata-action#about)
       # to extract tags and labels that will be applied to the specified image.

.github/workflows/ci.yml

@@ -9,6 +9,11 @@ on:
 jobs:
   build:
     runs-on: ubuntu-latest
+    permissions:
+      contents: read
+      issues: read
+      pull-requests: read
+      packages: read
     steps:
       - name: checkout current repo
         uses: actions/checkout@v3
@@ -21,47 +26,51 @@ jobs:
           path: ci/jedicmake
           repository: JCSDA-internal/jedi-cmake
           submodules: true
-          token: ${{ secrets.GH_PAT }}
+          token: ${{ secrets.GITHUB_TOKEN }}
 
       - name: checkout oops
         uses: actions/checkout@v3
         with:
           path: ci/oops
           repository: JCSDA-internal/oops
-          token: ${{ secrets.GH_PAT }}
+          token: ${{ secrets.GITHUB_TOKEN }}
 
       - name: checkout ioda
         uses: actions/checkout@v3
         with:
           path: ci/ioda
           repository: JCSDA-internal/ioda
-          token: ${{ secrets.GH_PAT }}
+          token: ${{ secrets.GITHUB_TOKEN }}
 
       - name: checkout ufo
         uses: actions/checkout@v3
         with:
           path: ci/ufo
           repository: JCSDA-internal/ufo
-          token: ${{ secrets.GH_PAT }}
-
-      - name: checkout atlas-orca
-        uses: actions/checkout@v3
-        with:
-          path: ci/atlas-orca
-          repository: ECMWF/atlas-orca
+          token: ${{ secrets.GITHUB_TOKEN }}
 
       - name: checkout atlas-data
         uses: actions/checkout@v3
         with:
           path: ci/atlas-data
           repository: MetOffice/atlas-data
           lfs: true
-          token: ${{ secrets.GH_PAT }}
+          token: ${{ secrets.GITHUB_TOKEN }}
+
+      - name: Log in to GitHub Container Registry
+        uses: docker/login-action@v3
+        with:
+          registry: ghcr.io
+          username: darth
+          password: ${{ secrets.GITHUB_TOKEN }}
+
+      - name: Pull Docker image
+        run: docker pull ghcr.io/darth/orca-jedi/ci-almalinux9:develop
 
       - name: build and test
         run: |
           docker run --rm \
             --entrypoint=/usr/local/src/orca-jedi/ci/build-and-test.sh \
             --workdir=/usr/local/src/orca-jedi/ci \
             --volume $PWD:/usr/local/src/orca-jedi \
-            'jcsda/docker-gnu-openmpi-dev:latest'
+            ghcr.io/${{ github.actor }}/orca-jedi/ci-almalinux9:v1.2.0

ci/CMakeLists.txt

@@ -17,7 +17,6 @@ if(NOT DEFINED jedicmake_DIR)
   set(jedicmake_DIR "${CMAKE_BINARY_DIR}/jedicmake")
 endif()
 
-add_subdirectory("${CMAKE_CURRENT_SOURCE_DIR}/atlas-orca" EXCLUDE_FROM_ALL)
 add_subdirectory("${CMAKE_CURRENT_SOURCE_DIR}/oops" EXCLUDE_FROM_ALL)
 add_subdirectory("${CMAKE_CURRENT_SOURCE_DIR}/ioda" EXCLUDE_FROM_ALL)
 add_subdirectory("${CMAKE_CURRENT_SOURCE_DIR}/ufo" EXCLUDE_FROM_ALL)

ci/build-and-test.sh

@@ -20,7 +20,20 @@ trap finally EXIT
 
 cd "${WORKD}"
 
-source /opt/spack-environment/activate.sh
+if [[ -f /opt/spack-environment/activate.sh ]]; then
+    source /opt/spack-environment/activate.sh
+fi
+
+# -- Enable OpenMPI over subscription -----------------------------------------
+if command -v ompi_info &>/dev/null; then
+    echo "Check support for MPI_THREAD_MULTIPLE"
+    ompi_info | grep -i 'thread support'
+    ompi_vn=$(ompi_info | awk '/Ident string:/ {print $3}')
+    case $ompi_vn in
+        4.*) export OMPI_MCA_rmaps_base_oversubscribe=1 ;;
+        5.*) export PRTE_MCA_rmaps_default_mapping_policy=:oversubscribe ;;
+    esac
+fi
 
 echo "
 -------------------------------
@@ -41,11 +54,6 @@ ln -s '..' "${HERE}/orca-jedi"
 ecbuild -S "${HERE}"
 make -j "${NPROC}"
 
-if [[ ! -f share/plugins/atlas-orca.yml ]]; then
- echo "ERROR atlas-orca.yml not found!" | tee >(cat >&2)
- exit 1
-fi
-
 env OMPI_ALLOW_RUN_AS_ROOT=1 OMPI_ALLOW_RUN_AS_ROOT_CONFIRM=1 \
     ATLAS_TRACE=1 ATLAS_DEBUG=1 \
     LD_LIBRARY_PATH="${HERE}/lib:${LD_LIBRARY_PATH}" \