Issue with Cell catcher and saving binary image files

[valendinoh]

Hi there,

The processed images doesn't seem to be saved when I ran the code in jupyter. Because when I ran the next block for identifying mitochondria, I get the following error message: YFP0143_27.tif is not a valid image file, try another file. Also in the select a file menu I only have the options to select the original images instead of the processed binary ones. Has someone an idea how to fix this issue

Thanks for your help

[Mitogenie]

Hi,
I am sorry that you are experiencing issues.
Based on the description of the problem, it is very hard to know what might be the cause of the error you are facing.
The MitoHacker code is actively maintained and updated on Mitogenie, which is a free platform to support scientific research. You get all the benefits of MitoHacker tools along with so many other useful tools to help you manage your research data.
You may register free at mitogenie.com
All the Mitohacker tools are offered on Mitogenie with a fully graphical interface.
If you experience any issues with analyzing your data on Mitogenie, you may contact them hello [at] mitogenie [dot] com
Thank you!