From 24a7f268f5610234d082b7329ecdafbdc3d687ba Mon Sep 17 00:00:00 2001 From: Chris Ki Date: Wed, 6 Mar 2024 23:40:14 -0500 Subject: [PATCH] Fixes issue #1101 with older version of cellpose --- suite2p/detection/anatomical.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/suite2p/detection/anatomical.py b/suite2p/detection/anatomical.py index 93178317..f8abe4f9 100644 --- a/suite2p/detection/anatomical.py +++ b/suite2p/detection/anatomical.py @@ -105,7 +105,7 @@ def roi_detect(mproj, diameter=None, cellprob_threshold=0.0, flow_threshold=1.5, model = CellposeModel(model_type=pretrained_model) else: model = CellposeModel(pretrained_model=pretrained_model) - masks = model.eval(mproj, net_avg=True, channels=[0, 0], diameter=diameter, + masks = model.eval(mproj, channels=[0, 0], diameter=diameter, cellprob_threshold=cellprob_threshold, flow_threshold=flow_threshold)[0] shape = masks.shape