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cerebellum_vermis_half_t1.json
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cerebellum_vermis_half_t1.json
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{
"initial_register":null,
"initial_local_register": {
"type": "ants",
"bbox": true,
"use_mask": true,
"options": {
"cost_function_par": "1,32,regular,0.5",
"transformation": "affine[ 0.5 ]",
"winsorize-image-intensities":"[0.005,0.995]"
}
},
"non_linear_register": true,
"non_linear_register_type": "ants",
"non_linear_register_level": 1,
"non_linear_register_start": 16,
"non_linear_register_options": {
"conf": {"16":200,"8":200,"4":100,"2":50, "1": 20 },
"blur": {"16":16 ,"8":8 ,"4":4 ,"2":2, "1": 1 },
"shrink": {"16":16 ,"8":8 ,"4":4 ,"2":2, "1": 1 },
"transformation": "SyN[ .25, 2.0 , 0.2 ]",
"use_histogram_matching": true,
"cost_function": "CC",
"cost_function_par": "1,3,Regular,1.0",
"winsorize-image-intensities": { "low":1,"high":99 }
},
"library": "library_t1.lst",
"build_remap": [
[101, 1],
[103, 2],
[105, 3],
[107, 4],
[109, 5],
[113, 6],
[115, 7],
[117, 8],
[119, 9],
[121, 10],
[123, 11],
[125, 12],
[200, 13],
[201, 14],
[500, 15],
[210, 16]
],
"classes": 17,
"build_flip_remap": [
[131,1],
[133,2],
[135,3],
[137,4],
[139,5],
[143,6],
[145,7],
[147,8],
[149,9],
[153,11],
[155,12],
[171,10],
[300,13],
[301,14],
[400,15],
[210,16]
],
"post_filters": {
"normalize": true,
"nuyl": false,
"denoise": false,
"denoise_beta": 0.5,
"denoise_search": 1,
"denoise_patch": 1
},
"op_mask": "E[4] D[8]",
"extend_boundary": 10,
"resample_order": 4,
"resample_baa": true,
"reference_model": "mni_icbm152_t1_tal_nlin_sym_55_ext.mnc",
"reference_mask": "mni_icbm152_t1_tal_nlin_sym_55_ext_mask.mnc",
"build_symmetric": true,
"build_symmetric_flip": true,
"label_map": {
"101":"lobule_I_and_II_right",
"103":"lobule_III_right",
"105":"lobule_IV_right",
"107":"lobule_V_right",
"108":"lobule_VII_Af_right",
"109":"lobule_VI_right",
"113":"Crus_I_right",
"115":"Crus_II_right",
"116":"lobule_VII_At_right",
"117":"lobule_VII_B_right",
"119":"lobule_VIII_A_right",
"121":"lobule_VIII_B_right",
"123":"lobule_IX_right",
"125":"lobule_X_right",
"131":"lobule_I_and_II_left",
"133":"lobule_III_left",
"135":"lobule_IV_left",
"136":"undefined",
"137":"lobule_V_left",
"138":"lobule_VII_Af_left",
"139":"lobule_VI_left",
"143":"Crus_I_left",
"145":"Crus_II_left",
"146":"lobule_VII_At_left",
"147":"lobule_VII_B_left",
"149":"lobule_VIII_A_left",
"153":"lobule_IX_left",
"155":"lobule_X_left",
"171":"lobule_VIII_B_left",
"200":"MC_peduncle_right",
"201":"SC_peduncle_right",
"210":"Vermis",
"300":"MC_peduncle_left",
"301":"SC_peduncle_left",
"400":"white_matter_left",
"500":"white_matter_right"
},
"fake_mask":true
}