Is it possible to use MSFragger in PD 3.1 with the current release?

[sciordia]

We have been waiting for PD 3.0 compatibility for over a year but Thermo has gone ahead and released version 3.1 of their software in September.

Do you plan to release a PD 3.1 compatible MsFragger release?.

Thank you very much.

Best regards,
Sergio

[huiyinc]

Hi Sergio,

Sorry for the late reply. Since I do not have PD v3.1 for testing, I am not sure if the MSFragger-PD node is workable for PDv3.1. The node is available for PD v2.5 and PD v3.0.

Huiyin

[sciordia]

Thank you very much for your reply @huiyinc . I understand that your priority right now is Fragpipe but for users who use msfragger it would be interesting to be able to use the latest versions of msfragger in PD. Especially because right now I don't know if there is a 100% working version in PD. I mean, we also have another server with PD version 2.5 and the msfragger node but if you upgrade to the latest release, it doesn't work properly... as I reported in this other issue [link]. Do you still don't have a solution?.

Best regards,

Sergio

[huiyinc]

Hi Sergio, Thank you for being patient with the updates. For the update of PD v3.0, we encountered some technical issues and have emailed PD developers for help. We will send you a message as soon as we get any response. Best regards, Huiyin Sergio Ciordia ***@***.***> 於 2024年5月21日 上午5:28 寫道：  Thank you very much for your reply @huiyinc <https://github.com/huiyinc> . I understand that your priority right now is Fragpipe but for users who use msfragger it would be interesting to be able to use the latest versions of msfragger in PD. Especially because right now I don't know if there is a 100% working version in PD. I mean, we also have another server with PD version 2.5 and the msfragger node but if you upgrade to the latest release, it doesn't work properly... as I reported in this other issue [link <#37>]. Do you still don't have a solution?. Best regards, Sergio — Reply to this email directly, view it on GitHub <#36 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/ALAWWA5YQPKWPEUIBKIUEBLZDJTG3AVCNFSM6AAAAABBKRCDOSVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZDCMRRGI2DAMJQGA> . You are receiving this because you were mentioned.Message ID: ***@***.***>