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Monitoring 2025#24

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zackarno wants to merge 102 commits intomainOCHA-DAP/ds-aa-lac-dry-corridor:mainfrom monitoring-2025OCHA-DAP/ds-aa-lac-dry-corridor:monitoring-2025Copy head branch name to clipboard

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Commits

Commits on Feb 4, 2025

• add analysis of refined adm 1 AOIs for both ECMWF and INSIVUMEH

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• make new threshold tables for technical note

  zackarno

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• little notebook cleanup

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• add url to rendered doc inside code chunk for easy reference

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Commits on Feb 6, 2025

• refactor analysis for refined geographic thesholds

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Commits on Feb 7, 2025

• add joint RP table and current season outlook to qmd

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• bugfix on var name - code chunk cleanup

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• re-structuring monitoring code

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• add datasource/insivumeh.R - required func i forgot to commit

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• Merge pull request #23 from OCHA-DAP/new-aoi-joint-rp

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Commits on Feb 9, 2025

• refactor monitoring for 2025 - test emails working.

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Commits on Feb 10, 2025

• add monitoring 2025 gha boilerplate yaml

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• change storage location for insivumeh rasters on blob

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• clean up/commenting change green color on email map

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• fix insivumeh blob path in loading, add aoi gt table to email

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• fix dissolving of guatemala admin 1 prior to zonal stats

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• create req file to attempt to cache reqs on GHA for testing

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• fix caching file name

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• setting up email list fitering- add temp depends_additoinal for box omission

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• fix yaml whitespace

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• add test options for EMAIL_WHO

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• add box to main dependency installation file

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• add test_gha_settings.R script to make sure GHA is setting env vars correctly

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• add testing script to yaml run

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• fix filepath typo

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• fix filepath typo

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• edit yaml

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• edit yaml to retry install of gghdx()

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Commits on Feb 11, 2025

• add r scripts back to yaml

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• add deps additional again for gghdx

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• add linux dep for gghdx dep

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• rename to re-cache

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• retrieve gghdx from cran for cache invalidation

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• gghdx installed successfully - trying mock email

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• get rid of development code

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• add RPostgres dep

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• update cache action version

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• consolidate depends

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• add cumulus and rpostgres in as deps correctly?

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• test adding postgres docker service

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• add dbplyr dep

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• add loggers

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• Merge branch 'aoi-refine-2025' into monitoring-2025

  zackarno

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• add geoarrow to see if helps w/ loading admin files in gha

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• reinstall latest cumulus from blob

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Commits on Feb 12, 2025

• re-cache pkg install all from one depends script

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• add gghdx() in to update_activation_status

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• clearing cache and reinstalling - new first time bug

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• remove clear cache

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• add libcur dep

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• try adding curl dep

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• add script back in for running afte re-installing cache

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• switch location of gghdx() - put inside rmd?

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Commits on Feb 14, 2025

• rm gghdx also add loggers

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• update loggers

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• add RUN_DATE_USE to env section of yaml

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• fix yaml

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• add gghdx back into rmd

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• turn off gghdx()

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• try to add gghdx$ to all gghex calls

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• get rid of duplciate ggplot2 call

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• try debug w/ gdb

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• rm debug -- change port in settings

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• remove map from email

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• chg subj

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• try adding gghdx() into map.R

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• get rid of gghdx in main update script

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• rm dev code

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• pin R version to 4.4.1

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• back to R 4.x

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• going to recach pkgs

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• add action back

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• rm r run to cache packages

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• add gghdx() back in

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• add comments explaining RUN_DATE_USE

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• add gghdx into eu module?

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• rm gghdx()

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• rm default args

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• change unset to july

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• remove get_run_date() func

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• breakdown ifelse

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• change obj name from run_date to run_date_set to rm any issue w/ arg and values being same

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• add m_choro print

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• rm magrittr

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• change env var to WHEN_TO_MONITOR

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• try using gghdx::theme_hdx() instead of gghdx()

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• wipe gghdx() calls

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• try setting default to postrera

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• put back to and subject in email

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• get rid of double subject in smtp_send

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• try sysfonts

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• try making map in rmd instead of .r

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• m_choro back to R script

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• smtp_send(verbose=TRUE)

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• try ssl = F just for fun

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• clean up all comments yaml

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• ssl=TRUE... doesnt make much diff

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Commits on Feb 15, 2025

• try add a new install.packages for curl/httr

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• minor indentation adjustment

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• try adding remotes install first

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• add update script back into yaml - to be tried after caching

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Commits on Feb 26, 2025

• update creds

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