Monitoring 2025

.github/depends_2025.R

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+#' requirements for 2025 monitoring.
+#' 
+#' 
+required_pkgs <- c(
+  "RNetCDF", "terra", "sf", "dplyr", "exactextractr", "lubridate", "ggplot2", 
+  "ggrepel", "tidyr", "janitor", "stringr", "glue", "rlang", "purrr", "forcats", 
+  "readr", "gt", "arrow", "geoarrow", "AzureStor", "ncmeta", "logger", "blastula", 
+  "tibble", "showtext", "remotes", "box", "dbplyr", "RPostgres", "curl"
+)
+
+
+install.packages(required_pkgs)
+
+# Ensure remotes package is installed before using it
+if (!requireNamespace("remotes", quietly = TRUE)) {
+  install.packages("remotes")
+}
+
+remotes::install_github("OCHA-DAP/cumulus")
+
+# Additional packages
+install.packages("gghdx")
+
+# # List of required packages
+# required_pkgs <- c(
+#   "RNetCDF",
+#   "terra",
+#   "sf", 
+#   "dplyr",
+#   "exactextractr",
+#   "lubridate",
+#   "ggplot2", 
+#   "ggrepel",
+#   "tidyr",
+#   "janitor",
+#   "stringr",
+#   "glue",
+#   "rlang", 
+#   "purrr",
+#   "forcats",
+#   "readr",
+#   "gt", 
+#   "arrow",
+#   "geoarrow",
+#   "AzureStor", 
+#   "ncmeta",
+#   "logger",
+#   "blastula",
+#   "tibble",
+#   "showtext",
+#   "remotes",
+#   "box",
+#   "dbplyr",
+#   "RPostgres",
+#   "curl"
+# )
+# install.packages(required_pkgs)
+# 
+# install.packages(c(
+#   "gghdx"
+# )
+# )
+# 
+# remotes::install_github(
+#   repo = "OCHA-DAP/cumulus"
+# )
+# install.packages("gghdx")
+# # once we have `{remotes}` should be able to install_github
+
+

.github/depends_additional_2025.R

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+install.packages(c(
+  "dbplyr"
+  )
+)
+
+remotes::install_github(
+  repo = "OCHA-DAP/cumulus"
+)

.github/workflows/cadc_2025_monitoring.yaml

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+# This workflow uses actions to automatically run the dry corridor drought trigger monitoring.
+# script.
+
+name: cadc-2025-trigger-monitoring
+
+on:
+  workflow_dispatch:
+    inputs:
+      EMAIL_WHO: 
+        required: true
+        type: choice
+        default: 'core_developer'
+        options:
+          - core_developer
+          - developers
+          - internal_chd
+          - internal_ocha
+          - full_list
+      WHEN_TO_MONITOR: 
+        required: true
+        type: choice
+        default: 'last_primera'
+        options:
+          - last_primera
+          - last_postrera
+          - current
+
+jobs:
+  monitor:
+    runs-on: ubuntu-latest
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+      CHD_DS_EMAIL_USERNAME: ${{ secrets.DSCI_AWS_EMAIL_USERNAME }}
+      CHD_DS_EMAIL_PASSWORD: ${{ secrets.DSCI_AWS_EMAIL_PASSWORD }}
+      CHD_DS_HOST: ${{ secrets.DSCI_AWS_EMAIL_HOST }}
+      CHD_DS_PORT: 465
+      DS_AZ_BLOB_DEV_SAS: ${{ secrets.DSCI_AZ_BLOB_DEV_SAS_WRITE }}
+      DS_AZ_DB_PROD_UID_WRITE: ${{ secrets.DSCI_AZ_DB_PROD_UID_WRITE }}
+      DS_AZ_DB_PROD_HOST: ${{ secrets.DSCI_AZ_DB_PROD_HOST }}
+      DS_AZ_DB_PROD_PW_WRITE: ${{ secrets.DSCI_AZ_DB_PROD_PW_WRITE }}
+      DS_AZ_DB_PROD_NAME: ${{ secrets.DS_AZ_DB_PROD_NAME }}
+      EMAIL_WHO: ${{ inputs.EMAIL_WHO || 'core_developer' }}
+      WHEN_TO_MONITOR: ${{ inputs.WHEN_TO_MONITOR || 'current' }}
+
+    services:
+      postgres:
+        image: postgres:latest
+        env:
+          POSTGRES_USER: ${{ secrets.DS_AZ_DB_PROD_UID_WRITE }}
+          POSTGRES_PASSWORD: ${{ secrets.DS_AZ_DB_PROD_PW_WRITE }}
+          POSTGRES_DB: ${{ secrets.DS_AZ_DB_PROD_NAME }}
+          POSTGRES_HOST: localhost
+        ports:
+          - 5432:5432
+        # needed because the postgres container does not provide a healthcheck
+        options: --health-cmd pg_isready --health-interval 10s --health-timeout 5s --health-retries 5
+
+    steps:
+      - uses: actions/checkout@v3
+      - name: Set up R
+        uses: r-lib/actions/setup-r@v2
+        with:
+          r-version: '4.x'
+      - uses: r-lib/actions/setup-pandoc@v2
+
+      - name: Install System Dependencies
+        run: |
+          sudo apt-get update
+          sudo apt-get install -y \
+            libxml2-dev \
+            libgdal-dev \
+            libproj-dev \
+            libgeos-dev \
+            libudunits2-dev \
+            libsodium-dev \
+            libfreetype6-dev \
+            libcurl4-openssl-dev
+
+      - name: Cache R dependencies
+        id: cache-r-deps
+        uses: actions/cache@v4
+        with:
+          path: ${{ env.R_LIBS_USER }}
+          key: R-dependency-cache-${{ hashFiles('.github/depends_2025.R') }}
+
+      - name: Install R dependencies
+        if: steps.cache-r-deps.outputs.cache-hit != 'true'
+        run: |
+          Rscript -e 'install.packages("remotes")'
+          Rscript .github/depends_2025.R
+
+      - name: Run R-script-test-env-vars
+        shell: bash
+        run: Rscript ./src/monitoring_2025/test_gha_settings.R
+
+      - name: Run R-script-cadc-2025-trigger-monitoring
+        shell: bash
+        run: Rscript ./src/monitoring_2025/update_activation_status.R