diff --git a/R/README.md b/R/README.md index 76439f809..72ae9213e 100644 --- a/R/README.md +++ b/R/README.md @@ -28,7 +28,7 @@ | calc_gSGC | Calculate De value based on the gSGC by Li et al., 2015 | Function returns De value and De value error using the global standardised growth curve (gSGC) assumption proposed by Li et al., 2015 for OSL dating of sedimentary quartz | 0.1.1 | 2017-01-24 | 21:10:47 | Sebastian Kreutzer, IRAMAT-CRP2A, Universite Bordeaux Montagine (France)
R Luminescence Package Team | Kreutzer, S. (2017). calc_gSGC(): Calculate De value based on the gSGC by Li et al., 2015. Function version 0.1.1. In: Kreutzer, S., Dietze, M., Burow, C., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J. (2017). Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.8.0. https://CRAN.R-project.org/package=Luminescence | | calc_HomogeneityTest | Apply a simple homogeneity test after Galbraith (2003) | A simple homogeneity test for De estimates | 0.2 | 2016-05-02 | 09:36:06 | Christoph Burow, University of Cologne (Germany)
R Luminescence Package Team | Burow, C. (2017). calc_HomogeneityTest(): Apply a simple homogeneity test after Galbraith (2003). Function version 0.2. In: Kreutzer, S., Dietze, M., Burow, C., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J. (2017). Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.8.0. https://CRAN.R-project.org/package=Luminescence | | calc_IEU | Apply the internal-external-uncertainty (IEU) model after Thomsen et al.
(2007) to a given De distribution | Function to calculate the IEU De for a De data set. | 0.1.0 | 2016-05-02 | 09:36:06 | Rachel Smedley, Geography & Earth Sciences, Aberystwyth University
(United Kingdom) Based on an excel spreadsheet and accompanying macro
written by Kristina Thomsen.
R Luminescence Package Team | Smedley, R.K. (2017). calc_IEU(): Apply the internal-external-uncertainty (IEU) model after Thomsen et al. (2007) to a given De distribution. Function version 0.1.0. In: Kreutzer, S., Dietze, M., Burow, C., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J. (2017). Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.8.0. https://CRAN.R-project.org/package=Luminescence | -| calc_Kars2008 | Apply the Kars et al. (2008) model | A function to calculate the expected sample specific fraction of saturation following Kars et al. (2008) and Huntley (2006). | 0.1.0 | 2017-03-30 | 17:20:45 | Georgina King, University of Cologne (Germany),
Christoph Burow, University of Cologne (Germany)
R Luminescence Package Team | King, G., Burow, C. (2017). calc_Kars2008(): Apply the Kars et al. (2008) model. Function version 0.1.0. In: Kreutzer, S., Dietze, M., Burow, C., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J. (2017). Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.8.0. https://CRAN.R-project.org/package=Luminescence | +| calc_Kars2008 | Apply the Kars et al. (2008) model | A function to calculate the expected sample specific fraction of saturation following Kars et al. (2008) and Huntley (2006). | 0.1.0 | 2017-03-30 | 23:05:40 | Georgina King, University of Cologne (Germany),
Christoph Burow, University of Cologne (Germany)
R Luminescence Package Team | King, G., Burow, C. (2017). calc_Kars2008(): Apply the Kars et al. (2008) model. Function version 0.1.0. In: Kreutzer, S., Dietze, M., Burow, C., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J. (2017). Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.8.0. https://CRAN.R-project.org/package=Luminescence | | calc_MaxDose | Apply the maximum age model to a given De distribution | Function to fit the maximum age model to De data. This is a wrapper function that calls calc_MinDose() and applies a similiar approach as described in Olley et al. (2006). | 0.3.1 | 2017-01-24 | 21:10:47 | Christoph Burow, University of Cologne (Germany) Based on a
rewritten S script of Rex Galbraith, 2010
R Luminescence Package Team | Burow, C. (2017). calc_MaxDose(): Apply the maximum age model to a given De distribution. Function version 0.3.1. In: Kreutzer, S., Dietze, M., Burow, C., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J. (2017). Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.8.0. https://CRAN.R-project.org/package=Luminescence | | calc_MinDose | Apply the (un-)logged minimum age model (MAM) after Galbraith et al. (1999)
to a given De distribution | Function to fit the (un-)logged three or four parameter minimum dose model (MAM-3/4) to De data. | 0.4.4 | 2017-02-24 | 10:30:49 | Christoph Burow, University of Cologne (Germany) Based on a
rewritten S script of Rex Galbraith, 2010 The bootstrap approach is
based on a rewritten MATLAB script of Alastair Cunningham. Alastair
Cunningham is thanked for his help in implementing and cross-checking the
code.
R Luminescence Package Team | Burow, C. (2017). calc_MinDose(): Apply the (un-)logged minimum age model (MAM) after Galbraith et al. (1999) to a given De distribution. Function version 0.4.4. In: Kreutzer, S., Dietze, M., Burow, C., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J. (2017). Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.8.0. https://CRAN.R-project.org/package=Luminescence | | calc_OSLLxTxRatio | Calculate Lx/Tx ratio for CW-OSL curves | Calculate Lx/Tx ratios from a given set of CW-OSL curves assuming late light background subtraction. | 0.7.0 | 2017-02-16 | 15:03:51 | Sebastian Kreutzer, IRAMAT-CRP2A, Universite Bordeaux Montaigne
(France)
R Luminescence Package Team | Kreutzer, S. (2017). calc_OSLLxTxRatio(): Calculate Lx/Tx ratio for CW-OSL curves. Function version 0.7.0. In: Kreutzer, S., Dietze, M., Burow, C., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J. (2017). Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.8.0. https://CRAN.R-project.org/package=Luminescence | @@ -74,11 +74,11 @@ | methods_RLum | methods_RLum | Methods for S3-generics implemented for the package 'Luminescence'. This document summarises all implemented S3-generics. The name of the function is given before the first dot, after the dot the name of the object that is supported by this method is given, e.g. plot.RLum.Data.Curve can be called by plot(object, ...) , where object is the RLum.Data.Curve object. | NA | NA | NA | NA | NA | | model_LuminescenceSignals | Model Luminescence Signals (wrapper) | Wrapper for the function model_LuminescenceSignals from the package RLumModel-package . For the further details and examples please see the manual of this package. | 0.1.3 | 2017-02-10 | 18:30:04 | Johannes Friedrich, University of Bayreuth (Germany),
Sebastian Kreutzer, IRAMAT-CRP2A, Universite Bordeaux Montaige (France),
R Luminescence Package Team | Friedrich, J., Kreutzer, S. (2017). model_LuminescenceSignals(): Model Luminescence Signals (wrapper). Function version 0.1.3. In: Kreutzer, S., Dietze, M., Burow, C., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J. (2017). Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.8.0. https://CRAN.R-project.org/package=Luminescence | | names_RLum | S4-names function for RLum S4 class objects | Function calls object-specific names functions for RLum S4 class objects. | 0.1.0 | 2015-11-29 | 17:27:48 | Sebastian Kreutzer, IRAMAT-CRP2A, Universite Bordeaux Montaigne
(France)
R Luminescence Package Team | Kreutzer, S. (2017). names_RLum(): S4-names function for RLum S4 class objects. Function version 0.1.0. In: Kreutzer, S., Dietze, M., Burow, C., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J. (2017). Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.8.0. https://CRAN.R-project.org/package=Luminescence | -| plot_AbanicoPlot | Function to create an Abanico Plot. | A plot is produced which allows comprehensive presentation of data precision and its dispersion around a central value as well as illustration of a kernel density estimate, histogram and/or dot plot of the dose values. | 0.1.10 | 2017-03-30 | 17:20:45 | Michael Dietze, GFZ Potsdam (Germany), Sebastian Kreutzer,
IRAMAT-CRP2A, Universite Bordeaux Montaigne (France) Inspired by a plot
introduced by Galbraith & Green (1990)
R Luminescence Package Team | Dietze, M., Kreutzer, S. (2017). plot_AbanicoPlot(): Function to create an Abanico Plot.. Function version 0.1.10. In: Kreutzer, S., Dietze, M., Burow, C., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J. (2017). Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.8.0. https://CRAN.R-project.org/package=Luminescence | +| plot_AbanicoPlot | Function to create an Abanico Plot. | A plot is produced which allows comprehensive presentation of data precision and its dispersion around a central value as well as illustration of a kernel density estimate, histogram and/or dot plot of the dose values. | 0.1.10 | 2017-03-30 | 23:05:40 | Michael Dietze, GFZ Potsdam (Germany), Sebastian Kreutzer,
IRAMAT-CRP2A, Universite Bordeaux Montaigne (France) Inspired by a plot
introduced by Galbraith & Green (1990)
R Luminescence Package Team | Dietze, M., Kreutzer, S. (2017). plot_AbanicoPlot(): Function to create an Abanico Plot.. Function version 0.1.10. In: Kreutzer, S., Dietze, M., Burow, C., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J. (2017). Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.8.0. https://CRAN.R-project.org/package=Luminescence | | plot_DetPlot | Create De(t) plot | Plots the equivalent dose (De) in dependency of the chosen signal integral (cf. Bailey et al., 2003). The function is simply passing several arguments to the function plot and the used analysis functions and runs it in a loop. Example: legend.pos for legend position, legend for legend text. | 0.1.1 | 2017-01-24 | 21:10:47 | Sebastian Kreutzer, IRAMAT-CRP2A, Universite Bordeaux Montaigne (France)
R Luminescence Package Team | Kreutzer, S. (2017). plot_DetPlot(): Create De(t) plot. Function version 0.1.1. In: Kreutzer, S., Dietze, M., Burow, C., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J. (2017). Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.8.0. https://CRAN.R-project.org/package=Luminescence | -| plot_DRTResults | Visualise dose recovery test results | The function provides a standardised plot output for dose recovery test measurements. | 0.1.10 | 2017-03-30 | 17:20:45 | Sebastian Kreutzer, IRAMAT-CRP2A, Universite Bordeaux Montaigne
(France), Michael Dietze, GFZ Potsdam (Germany)
R Luminescence Package Team | Kreutzer, S., Dietze, M. (2017). plot_DRTResults(): Visualise dose recovery test results. Function version 0.1.10. In: Kreutzer, S., Dietze, M., Burow, C., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J. (2017). Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.8.0. https://CRAN.R-project.org/package=Luminescence | +| plot_DRTResults | Visualise dose recovery test results | The function provides a standardised plot output for dose recovery test measurements. | 0.1.10 | 2017-03-30 | 23:05:40 | Sebastian Kreutzer, IRAMAT-CRP2A, Universite Bordeaux Montaigne
(France), Michael Dietze, GFZ Potsdam (Germany)
R Luminescence Package Team | Kreutzer, S., Dietze, M. (2017). plot_DRTResults(): Visualise dose recovery test results. Function version 0.1.10. In: Kreutzer, S., Dietze, M., Burow, C., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J. (2017). Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.8.0. https://CRAN.R-project.org/package=Luminescence | | plot_FilterCombinations | Plot filter combinations along with the (optional) net transmission window | The function allows to plot transmission windows for different filters. Missing data for specific wavelenghts are automatically interpolated for the given filter data using the function approx . With that a standardised output is reached and a net transmission window can be shown. | 0.1.0 | 2016-10-18 | 10:21:27 | Sebastian Kreutzer, IRAMAT-CRP2A, Universite Bordeaux Montagine (France)
R Luminescence Package Team | Kreutzer, S. (2017). plot_FilterCombinations(): Plot filter combinations along with the (optional) net transmission window. Function version 0.1.0. In: Kreutzer, S., Dietze, M., Burow, C., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J. (2017). Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.8.0. https://CRAN.R-project.org/package=Luminescence | -| plot_GrowthCurve | Fit and plot a growth curve for luminescence data (Lx/Tx against dose) | A dose response curve is produced for luminescence measurements using a regenerative or additive protocol. The function supports interpolation and extraxpolation to calculate the equivalent dose. | 1.9.5 | 2017-03-30 | 17:20:45 | Sebastian Kreutzer, IRAMAT-CRP2A, Universite Bordeaux Montaigne
(France), Michael Dietze, GFZ Potsdam (Germany)
R Luminescence Package Team | Kreutzer, S., Dietze, M. (2017). plot_GrowthCurve(): Fit and plot a growth curve for luminescence data (Lx/Tx against dose). Function version 1.9.5. In: Kreutzer, S., Dietze, M., Burow, C., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J. (2017). Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.8.0. https://CRAN.R-project.org/package=Luminescence | +| plot_GrowthCurve | Fit and plot a growth curve for luminescence data (Lx/Tx against dose) | A dose response curve is produced for luminescence measurements using a regenerative or additive protocol. The function supports interpolation and extraxpolation to calculate the equivalent dose. | 1.9.5 | 2017-03-30 | 23:05:40 | Sebastian Kreutzer, IRAMAT-CRP2A, Universite Bordeaux Montaigne
(France), Michael Dietze, GFZ Potsdam (Germany)
R Luminescence Package Team | Kreutzer, S., Dietze, M. (2017). plot_GrowthCurve(): Fit and plot a growth curve for luminescence data (Lx/Tx against dose). Function version 1.9.5. In: Kreutzer, S., Dietze, M., Burow, C., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J. (2017). Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.8.0. https://CRAN.R-project.org/package=Luminescence | | plot_Histogram | Plot a histogram with separate error plot | Function plots a predefined histogram with an accompanying error plot as suggested by Rex Galbraith at the UK LED in Oxford 2010. | 0.4.4 | 2016-07-16 | 11:28:11 | Michael Dietze, GFZ Potsdam (Germany), Sebastian Kreutzer,
IRAMAT-CRP2A, Universite Bordeaux Montaigne (France)
R Luminescence Package Team | Dietze, M., Kreutzer, S. (2017). plot_Histogram(): Plot a histogram with separate error plot. Function version 0.4.4. In: Kreutzer, S., Dietze, M., Burow, C., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J. (2017). Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.8.0. https://CRAN.R-project.org/package=Luminescence | | plot_KDE | Plot kernel density estimate with statistics | Plot a kernel density estimate of measurement values in combination with the actual values and associated error bars in ascending order. If enabled, the boxplot will show the usual distribution parameters (median as bold line, box delimited by the first and third quartile, whiskers defined by the extremes and outliers shown as points) and also the mean and standard deviation as pale bold line and pale polygon, respectively. | 3.5.5 | 2017-02-24 | 10:30:49 | Michael Dietze, GFZ Potsdam (Germany), Sebastian Kreutzer,
IRAMAT-CRP2A, Universite Bordeaux Montaigne
R Luminescence Package Team | Dietze, M., Kreutzer, S. (2017). plot_KDE(): Plot kernel density estimate with statistics. Function version 3.5.5. In: Kreutzer, S., Dietze, M., Burow, C., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J. (2017). Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.8.0. https://CRAN.R-project.org/package=Luminescence | | plot_NRt | Visualise natural/regenerated signal ratios | This function creates a Natural/Regenerated signal vs. time (NR(t)) plot as shown in Steffen et al. 2009 | NA | NA | NA | Christoph Burow, University of Cologne (Germany)
 | Burow, C. (2017). plot_NRt(): Visualise natural/regenerated signal ratios. In: Kreutzer, S., Dietze, M., Burow, C., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J. (2017). Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.8.0. https://CRAN.R-project.org/package=Luminescence | @@ -92,7 +92,7 @@ | plot_RLum.Results | Plot function for an RLum.Results S4 class object | The function provides a standardised plot output for data of an RLum.Results S4 class object | 0.2.1 | 2017-01-24 | 21:10:47 | Christoph Burow, University of Cologne (Germany), Sebastian Kreutzer, IRAMAT-CRP2A,
Universite Bordeaux Montaigne (France)
R Luminescence Package Team | Burow, C., Kreutzer, S. (2017). plot_RLum.Results(): Plot function for an RLum.Results S4 class object. Function version 0.2.1. In: Kreutzer, S., Dietze, M., Burow, C., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J. (2017). Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.8.0. https://CRAN.R-project.org/package=Luminescence | | plot_ViolinPlot | Create a violin plot | Draws a kernal densiy plot in combination with a boxplot in its middle. The shape of the violin is constructed using a mirrored density curve. This plot is especially designed for cases where the individual errors are zero or to small to be visualised. The idea for this plot is based on the the 'volcano plot' in the ggplot2 package by Hadely Wickham and Winston Chang. The general idea for the Violin Plot seems to be introduced by Hintze and Nelson (1998). | 0.1.3 | 2017-02-10 | 18:30:04 | Sebastian Kreutzer, IRAMAT-CRP2A, Universite Bordeaux Montaigne (France)
R Luminescence Package Team | Kreutzer, S. (2017). plot_ViolinPlot(): Create a violin plot. Function version 0.1.3. In: Kreutzer, S., Dietze, M., Burow, C., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J. (2017). Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.8.0. https://CRAN.R-project.org/package=Luminescence | | PSL2Risoe.BINfileData | Convert portable OSL data to an Risoe.BINfileData object | Converts an RLum.Analysis object produced by the function read_PSL2R() to an Risoe.BINfileData object (BETA) . | 0.0.1 | 2017-02-10 | 18:30:04 | Christoph Burow, University of Cologne (Germany)
R Luminescence Package Team | Burow, C. (2017). PSL2Risoe.BINfileData(): Convert portable OSL data to an Risoe.BINfileData object. Function version 0.0.1. In: Kreutzer, S., Dietze, M., Burow, C., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J. (2017). Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.8.0. https://CRAN.R-project.org/package=Luminescence | -| read_BIN2R | Import Risoe BIN-file into R | Import a *.bin or a *.binx file produced by a Risoe DA15 and DA20 TL/OSL reader into R. | 0.15.5 | 2017-03-30 | 17:20:45 | Sebastian Kreutzer, IRAMAT-CRP2A, Universite Bordeaux Montaigne
(France), Margret C. Fuchs, HZDR Freiberg, (Germany)
R Luminescence Package Team | Kreutzer, S., Fuchs, M.C., Fuchs, M. (2017). read_BIN2R(): Import Risoe BIN-file into R. Function version 0.15.5. In: Kreutzer, S., Dietze, M., Burow, C., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J. (2017). Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.8.0. https://CRAN.R-project.org/package=Luminescence | +| read_BIN2R | Import Risoe BIN-file into R | Import a *.bin or a *.binx file produced by a Risoe DA15 and DA20 TL/OSL reader into R. | 0.15.5 | 2017-03-30 | 23:05:40 | Sebastian Kreutzer, IRAMAT-CRP2A, Universite Bordeaux Montaigne
(France), Margret C. Fuchs, HZDR Freiberg, (Germany)
R Luminescence Package Team | Kreutzer, S., Fuchs, M.C., Fuchs, M. (2017). read_BIN2R(): Import Risoe BIN-file into R. Function version 0.15.5. In: Kreutzer, S., Dietze, M., Burow, C., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J. (2017). Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.8.0. https://CRAN.R-project.org/package=Luminescence | | read_Daybreak2R | Import measurement data produced by a Daybreak TL/OSL reader into R | Import a TXT-file (ASCII file) or a DAT-file (binary file) produced by a Daybreak reader into R. The import of the DAT-files is limited to the file format described for the software TLAPLLIC v.3.2 used for a Daybreak, model 1100. | 0.3.0 | 2017-01-24 | 21:10:47 | Sebastian Kreutzer, IRAMAT-CRP2A, Universite Bordeaux Montaigne (France),
Anotine Zink, C2RMF, Palais du Louvre, Paris (France)
The ASCII-file import is based on a suggestion by Willian Amidon and Andrew Louis Gorin
R Luminescence Package Team | Kreutzer, S., Zink, A. (2017). read_Daybreak2R(): Import measurement data produced by a Daybreak TL/OSL reader into R. Function version 0.3.0. In: Kreutzer, S., Dietze, M., Burow, C., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J. (2017). Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.8.0. https://CRAN.R-project.org/package=Luminescence | | read_PSL2R | Import PSL files to R | Imports PSL files produced by a SUERC portable OSL reader into R (BETA) . | 0.0.1 | 2017-01-24 | 21:10:47 | Christoph Burow, University of Cologne (Germany)
R Luminescence Package Team | Burow, C. (2017). read_PSL2R(): Import PSL files to R. Function version 0.0.1. In: Kreutzer, S., Dietze, M., Burow, C., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J. (2017). Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.8.0. https://CRAN.R-project.org/package=Luminescence | | read_SPE2R | Import Princeton Intruments (TM) SPE-file into R | Function imports Princeton Instruments (TM) SPE-files into R environment and provides RLum objects as output. | 0.1.0 | 2017-02-10 | 18:30:04 | Sebastian Kreutzer, IRAMAT-CRP2A, Universite Bordeaux Montaigne
(France)
R Luminescence Package Team | Kreutzer, S. (2017). read_SPE2R(): Import Princeton Intruments (TM) SPE-file into R. Function version 0.1.0. In: Kreutzer, S., Dietze, M., Burow, C., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J. (2017). Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.8.0. https://CRAN.R-project.org/package=Luminescence | diff --git a/RLum.BuildResults/Luminescence-Ex.pdf b/RLum.BuildResults/Luminescence-Ex.pdf index 9b4817193..108f4d773 100644 Binary files a/RLum.BuildResults/Luminescence-Ex.pdf and b/RLum.BuildResults/Luminescence-Ex.pdf differ diff --git a/RLum.BuildResults/Luminescence-TimingExamples.0.7.4.pdf b/RLum.BuildResults/Luminescence-TimingExamples.0.7.4.pdf index 201cb9460..b78349e5c 100644 Binary files a/RLum.BuildResults/Luminescence-TimingExamples.0.7.4.pdf and b/RLum.BuildResults/Luminescence-TimingExamples.0.7.4.pdf differ diff --git a/RLum.BuildResults/Luminescence-manual.pdf b/RLum.BuildResults/Luminescence-manual.pdf index a8baabebd..4eecf4513 100644 Binary files a/RLum.BuildResults/Luminescence-manual.pdf and b/RLum.BuildResults/Luminescence-manual.pdf differ diff --git a/RLum.BuildResults/Luminescence_0.7.4-Functions.csv b/RLum.BuildResults/Luminescence_0.7.4-Functions.csv index 3e87ff7e9..9efad81d3 100644 --- a/RLum.BuildResults/Luminescence_0.7.4-Functions.csv +++ b/RLum.BuildResults/Luminescence_0.7.4-Functions.csv @@ -73,7 +73,7 @@ "calc_IEU","Apply the internal-external-uncertainty (IEU) model after Thomsen et al.
(2007) to a given De distribution","Function to calculate the IEU De for a De data set.","0.1.0","2016-05-02","09:36:06 ","Rachel Smedley, Geography & Earth Sciences, Aberystwyth University
(United Kingdom) Based on an excel spreadsheet and accompanying macro
written by Kristina Thomsen.
R Luminescence Package Team","Smedley, R.K. (2017). calc_IEU(): Apply the internal-external-uncertainty (IEU) model after Thomsen et al. (2007) to a given De distribution. Function version 0.1.0. In: Kreutzer, S., Dietze, M., Burow, C., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J. (2017). Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.8.0. https://CRAN.R-project.org/package=Luminescence " -"calc_Kars2008","Apply the Kars et al. (2008) model","A function to calculate the expected sample specific fraction of saturation following Kars et al. (2008) and Huntley (2006).","0.1.0","2017-03-30","17:20:45 +"calc_Kars2008","Apply the Kars et al. (2008) model","A function to calculate the expected sample specific fraction of saturation following Kars et al. (2008) and Huntley (2006).","0.1.0","2017-03-30","23:05:40 ","Georgina King, University of Cologne (Germany),
Christoph Burow, University of Cologne (Germany)
R Luminescence Package Team","King, G., Burow, C. (2017). calc_Kars2008(): Apply the Kars et al. (2008) model. Function version 0.1.0. In: Kreutzer, S., Dietze, M., Burow, C., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J. (2017). Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.8.0. https://CRAN.R-project.org/package=Luminescence " "calc_MaxDose","Apply the maximum age model to a given De distribution","Function to fit the maximum age model to De data. This is a wrapper function that calls calc_MinDose() and applies a similiar approach as described in Olley et al. (2006).","0.3.1","2017-01-24","21:10:47 @@ -185,19 +185,19 @@ "names_RLum","S4-names function for RLum S4 class objects","Function calls object-specific names functions for RLum S4 class objects.","0.1.0","2015-11-29","17:27:48 ","Sebastian Kreutzer, IRAMAT-CRP2A, Universite Bordeaux Montaigne
(France)
R Luminescence Package Team","Kreutzer, S. (2017). names_RLum(): S4-names function for RLum S4 class objects. Function version 0.1.0. In: Kreutzer, S., Dietze, M., Burow, C., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J. (2017). Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.8.0. https://CRAN.R-project.org/package=Luminescence " -"plot_AbanicoPlot","Function to create an Abanico Plot.","A plot is produced which allows comprehensive presentation of data precision and its dispersion around a central value as well as illustration of a kernel density estimate, histogram and/or dot plot of the dose values.","0.1.10","2017-03-30","17:20:45 +"plot_AbanicoPlot","Function to create an Abanico Plot.","A plot is produced which allows comprehensive presentation of data precision and its dispersion around a central value as well as illustration of a kernel density estimate, histogram and/or dot plot of the dose values.","0.1.10","2017-03-30","23:05:40 ","Michael Dietze, GFZ Potsdam (Germany), Sebastian Kreutzer,
IRAMAT-CRP2A, Universite Bordeaux Montaigne (France) Inspired by a plot
introduced by Galbraith & Green (1990)
R Luminescence Package Team","Dietze, M., Kreutzer, S. (2017). plot_AbanicoPlot(): Function to create an Abanico Plot.. Function version 0.1.10. In: Kreutzer, S., Dietze, M., Burow, C., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J. (2017). Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.8.0. https://CRAN.R-project.org/package=Luminescence " "plot_DetPlot","Create De(t) plot","Plots the equivalent dose (De) in dependency of the chosen signal integral (cf. Bailey et al., 2003). The function is simply passing several arguments to the function plot and the used analysis functions and runs it in a loop. Example: legend.pos for legend position, legend for legend text.","0.1.1","2017-01-24","21:10:47 ","Sebastian Kreutzer, IRAMAT-CRP2A, Universite Bordeaux Montaigne (France)
R Luminescence Package Team","Kreutzer, S. (2017). plot_DetPlot(): Create De(t) plot. Function version 0.1.1. In: Kreutzer, S., Dietze, M., Burow, C., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J. (2017). Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.8.0. https://CRAN.R-project.org/package=Luminescence " -"plot_DRTResults","Visualise dose recovery test results","The function provides a standardised plot output for dose recovery test measurements.","0.1.10","2017-03-30","17:20:45 +"plot_DRTResults","Visualise dose recovery test results","The function provides a standardised plot output for dose recovery test measurements.","0.1.10","2017-03-30","23:05:40 ","Sebastian Kreutzer, IRAMAT-CRP2A, Universite Bordeaux Montaigne
(France), Michael Dietze, GFZ Potsdam (Germany)
R Luminescence Package Team","Kreutzer, S., Dietze, M. (2017). plot_DRTResults(): Visualise dose recovery test results. Function version 0.1.10. In: Kreutzer, S., Dietze, M., Burow, C., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J. (2017). Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.8.0. https://CRAN.R-project.org/package=Luminescence " "plot_FilterCombinations","Plot filter combinations along with the (optional) net transmission window","The function allows to plot transmission windows for different filters. Missing data for specific wavelenghts are automatically interpolated for the given filter data using the function approx . With that a standardised output is reached and a net transmission window can be shown.","0.1.0","2016-10-18","10:21:27 ","Sebastian Kreutzer, IRAMAT-CRP2A, Universite Bordeaux Montagine (France)
R Luminescence Package Team","Kreutzer, S. (2017). plot_FilterCombinations(): Plot filter combinations along with the (optional) net transmission window. Function version 0.1.0. In: Kreutzer, S., Dietze, M., Burow, C., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J. (2017). Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.8.0. https://CRAN.R-project.org/package=Luminescence " -"plot_GrowthCurve","Fit and plot a growth curve for luminescence data (Lx/Tx against dose)","A dose response curve is produced for luminescence measurements using a regenerative or additive protocol. The function supports interpolation and extraxpolation to calculate the equivalent dose.","1.9.5","2017-03-30","17:20:45 +"plot_GrowthCurve","Fit and plot a growth curve for luminescence data (Lx/Tx against dose)","A dose response curve is produced for luminescence measurements using a regenerative or additive protocol. The function supports interpolation and extraxpolation to calculate the equivalent dose.","1.9.5","2017-03-30","23:05:40 ","Sebastian Kreutzer, IRAMAT-CRP2A, Universite Bordeaux Montaigne
(France), Michael Dietze, GFZ Potsdam (Germany)
R Luminescence Package Team","Kreutzer, S., Dietze, M. (2017). plot_GrowthCurve(): Fit and plot a growth curve for luminescence data (Lx/Tx against dose). Function version 1.9.5. In: Kreutzer, S., Dietze, M., Burow, C., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J. (2017). Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.8.0. https://CRAN.R-project.org/package=Luminescence " "plot_Histogram","Plot a histogram with separate error plot","Function plots a predefined histogram with an accompanying error plot as suggested by Rex Galbraith at the UK LED in Oxford 2010.","0.4.4","2016-07-16","11:28:11 @@ -238,7 +238,7 @@ "PSL2Risoe.BINfileData","Convert portable OSL data to an Risoe.BINfileData object","Converts an RLum.Analysis object produced by the function read_PSL2R() to an Risoe.BINfileData object (BETA) .","0.0.1","2017-02-10","18:30:04 ","Christoph Burow, University of Cologne (Germany)
R Luminescence Package Team","Burow, C. (2017). PSL2Risoe.BINfileData(): Convert portable OSL data to an Risoe.BINfileData object. Function version 0.0.1. In: Kreutzer, S., Dietze, M., Burow, C., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J. (2017). Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.8.0. https://CRAN.R-project.org/package=Luminescence " -"read_BIN2R","Import Risoe BIN-file into R","Import a *.bin or a *.binx file produced by a Risoe DA15 and DA20 TL/OSL reader into R.","0.15.5","2017-03-30","17:20:45 +"read_BIN2R","Import Risoe BIN-file into R","Import a *.bin or a *.binx file produced by a Risoe DA15 and DA20 TL/OSL reader into R.","0.15.5","2017-03-30","23:05:40 ","Sebastian Kreutzer, IRAMAT-CRP2A, Universite Bordeaux Montaigne
(France), Margret C. Fuchs, HZDR Freiberg, (Germany)
R Luminescence Package Team","Kreutzer, S., Fuchs, M.C., Fuchs, M. (2017). read_BIN2R(): Import Risoe BIN-file into R. Function version 0.15.5. In: Kreutzer, S., Dietze, M., Burow, C., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J. (2017). Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.8.0. https://CRAN.R-project.org/package=Luminescence " "read_Daybreak2R","Import measurement data produced by a Daybreak TL/OSL reader into R","Import a TXT-file (ASCII file) or a DAT-file (binary file) produced by a Daybreak reader into R. The import of the DAT-files is limited to the file format described for the software TLAPLLIC v.3.2 used for a Daybreak, model 1100.","0.3.0","2017-01-24","21:10:47 diff --git a/RLum.BuildResults/Luminescence_0.7.4-Functions.html b/RLum.BuildResults/Luminescence_0.7.4-Functions.html index c064257de..349cb997a 100644 --- a/RLum.BuildResults/Luminescence_0.7.4-Functions.html +++ b/RLum.BuildResults/Luminescence_0.7.4-Functions.html @@ -634,7 +634,7 @@

[version: 0.7.4 ]

2017-03-30 -17:20:45 +23:05:40 Georgina King, University of Cologne (Germany),
Christoph Burow, University of Cologne (Germany)
R Luminescence Package Team @@ -1620,7 +1620,7 @@

[version: 0.7.4 ]

2017-03-30 -17:20:45 +23:05:40 Michael Dietze, GFZ Potsdam (Germany), Sebastian Kreutzer,
IRAMAT-CRP2A, Universite Bordeaux Montaigne (France) Inspired by a plot
introduced by Galbraith & Green (1990)
R Luminescence Package Team @@ -1664,7 +1664,7 @@

[version: 0.7.4 ]

2017-03-30 -17:20:45 +23:05:40 Sebastian Kreutzer, IRAMAT-CRP2A, Universite Bordeaux Montaigne
(France), Michael Dietze, GFZ Potsdam (Germany)
R Luminescence Package Team @@ -1708,7 +1708,7 @@

[version: 0.7.4 ]

2017-03-30 -17:20:45 +23:05:40 Sebastian Kreutzer, IRAMAT-CRP2A, Universite Bordeaux Montaigne
(France), Michael Dietze, GFZ Potsdam (Germany)
R Luminescence Package Team @@ -2015,7 +2015,7 @@

[version: 0.7.4 ]

2017-03-30 -17:20:45 +23:05:40 Sebastian Kreutzer, IRAMAT-CRP2A, Universite Bordeaux Montaigne
(France), Margret C. Fuchs, HZDR Freiberg, (Germany)
R Luminescence Package Team diff --git a/RLum.BuildResults/Luminescence_0.7.4-Functions.tex b/RLum.BuildResults/Luminescence_0.7.4-Functions.tex index 889349ebe..36399da9b 100644 --- a/RLum.BuildResults/Luminescence_0.7.4-Functions.tex +++ b/RLum.BuildResults/Luminescence_0.7.4-Functions.tex @@ -78,7 +78,7 @@ 26 & calc\_IEU & Apply the internal-external-uncertainty (IEU) model after Thomsen et al.$<$br /$>$ (2007) to a given De distribution & Function to calculate the IEU De for a De data set. & 0.1.0 & 2016-05-02 & 09:36:06 & Rachel Smedley, Geography \& Earth Sciences, Aberystwyth University$<$br /$>$ (United Kingdom) Based on an excel spreadsheet and accompanying macro$<$br /$>$ written by Kristina Thomsen.$<$br /$>$ R Luminescence Package Team & Smedley, R.K. (2017). calc\_IEU(): Apply the internal-external-uncertainty (IEU) model after Thomsen et al. (2007) to a given De distribution. Function version 0.1.0. In: Kreutzer, S., Dietze, M., Burow, C., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J. (2017). Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.8.0. https://CRAN.R-project.org/package=Luminescence \\ - 27 & calc\_Kars2008 & Apply the Kars et al. (2008) model & A function to calculate the expected sample specific fraction of saturation following Kars et al. (2008) and Huntley (2006). & 0.1.0 & 2017-03-30 & 17:20:45 + 27 & calc\_Kars2008 & Apply the Kars et al. (2008) model & A function to calculate the expected sample specific fraction of saturation following Kars et al. (2008) and Huntley (2006). & 0.1.0 & 2017-03-30 & 23:05:40 & Georgina King, University of Cologne (Germany), $<$br /$>$ Christoph Burow, University of Cologne (Germany)$<$br /$>$ R Luminescence Package Team & King, G., Burow, C. (2017). calc\_Kars2008(): Apply the Kars et al. (2008) model. Function version 0.1.0. In: Kreutzer, S., Dietze, M., Burow, C., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J. (2017). Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.8.0. https://CRAN.R-project.org/package=Luminescence \\ 28 & calc\_MaxDose & Apply the maximum age model to a given De distribution & Function to fit the maximum age model to De data. This is a wrapper function that calls calc\_MinDose() and applies a similiar approach as described in Olley et al. (2006). & 0.3.1 & 2017-01-24 & 21:10:47 @@ -190,19 +190,19 @@ 72 & names\_RLum & S4-names function for RLum S4 class objects & Function calls object-specific names functions for RLum S4 class objects. & 0.1.0 & 2015-11-29 & 17:27:48 & Sebastian Kreutzer, IRAMAT-CRP2A, Universite Bordeaux Montaigne$<$br /$>$ (France)$<$br /$>$ R Luminescence Package Team & Kreutzer, S. (2017). names\_RLum(): S4-names function for RLum S4 class objects. Function version 0.1.0. In: Kreutzer, S., Dietze, M., Burow, C., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J. (2017). Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.8.0. https://CRAN.R-project.org/package=Luminescence \\ - 73 & plot\_AbanicoPlot & Function to create an Abanico Plot. & A plot is produced which allows comprehensive presentation of data precision and its dispersion around a central value as well as illustration of a kernel density estimate, histogram and/or dot plot of the dose values. & 0.1.10 & 2017-03-30 & 17:20:45 + 73 & plot\_AbanicoPlot & Function to create an Abanico Plot. & A plot is produced which allows comprehensive presentation of data precision and its dispersion around a central value as well as illustration of a kernel density estimate, histogram and/or dot plot of the dose values. & 0.1.10 & 2017-03-30 & 23:05:40 & Michael Dietze, GFZ Potsdam (Germany), Sebastian Kreutzer,$<$br /$>$ IRAMAT-CRP2A, Universite Bordeaux Montaigne (France) Inspired by a plot$<$br /$>$ introduced by Galbraith \& Green (1990)$<$br /$>$ R Luminescence Package Team & Dietze, M., Kreutzer, S. (2017). plot\_AbanicoPlot(): Function to create an Abanico Plot.. Function version 0.1.10. In: Kreutzer, S., Dietze, M., Burow, C., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J. (2017). Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.8.0. https://CRAN.R-project.org/package=Luminescence \\ 74 & plot\_DetPlot & Create De(t) plot & Plots the equivalent dose (De) in dependency of the chosen signal integral (cf. Bailey et al., 2003). The function is simply passing several arguments to the function plot and the used analysis functions and runs it in a loop. Example: legend.pos for legend position, legend for legend text. & 0.1.1 & 2017-01-24 & 21:10:47 & Sebastian Kreutzer, IRAMAT-CRP2A, Universite Bordeaux Montaigne (France)$<$br /$>$ R Luminescence Package Team & Kreutzer, S. (2017). plot\_DetPlot(): Create De(t) plot. Function version 0.1.1. In: Kreutzer, S., Dietze, M., Burow, C., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J. (2017). Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.8.0. https://CRAN.R-project.org/package=Luminescence \\ - 75 & plot\_DRTResults & Visualise dose recovery test results & The function provides a standardised plot output for dose recovery test measurements. & 0.1.10 & 2017-03-30 & 17:20:45 + 75 & plot\_DRTResults & Visualise dose recovery test results & The function provides a standardised plot output for dose recovery test measurements. & 0.1.10 & 2017-03-30 & 23:05:40 & Sebastian Kreutzer, IRAMAT-CRP2A, Universite Bordeaux Montaigne$<$br /$>$ (France), Michael Dietze, GFZ Potsdam (Germany)$<$br /$>$ R Luminescence Package Team & Kreutzer, S., Dietze, M. (2017). plot\_DRTResults(): Visualise dose recovery test results. Function version 0.1.10. In: Kreutzer, S., Dietze, M., Burow, C., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J. (2017). Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.8.0. https://CRAN.R-project.org/package=Luminescence \\ 76 & plot\_FilterCombinations & Plot filter combinations along with the (optional) net transmission window & The function allows to plot transmission windows for different filters. Missing data for specific wavelenghts are automatically interpolated for the given filter data using the function approx . With that a standardised output is reached and a net transmission window can be shown. & 0.1.0 & 2016-10-18 & 10:21:27 & Sebastian Kreutzer, IRAMAT-CRP2A, Universite Bordeaux Montagine (France) $<$br /$>$ R Luminescence Package Team & Kreutzer, S. (2017). plot\_FilterCombinations(): Plot filter combinations along with the (optional) net transmission window. Function version 0.1.0. In: Kreutzer, S., Dietze, M., Burow, C., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J. (2017). Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.8.0. https://CRAN.R-project.org/package=Luminescence \\ - 77 & plot\_GrowthCurve & Fit and plot a growth curve for luminescence data (Lx/Tx against dose) & A dose response curve is produced for luminescence measurements using a regenerative or additive protocol. The function supports interpolation and extraxpolation to calculate the equivalent dose. & 1.9.5 & 2017-03-30 & 17:20:45 + 77 & plot\_GrowthCurve & Fit and plot a growth curve for luminescence data (Lx/Tx against dose) & A dose response curve is produced for luminescence measurements using a regenerative or additive protocol. The function supports interpolation and extraxpolation to calculate the equivalent dose. & 1.9.5 & 2017-03-30 & 23:05:40 & Sebastian Kreutzer, IRAMAT-CRP2A, Universite Bordeaux Montaigne$<$br /$>$ (France), Michael Dietze, GFZ Potsdam (Germany)$<$br /$>$ R Luminescence Package Team & Kreutzer, S., Dietze, M. (2017). plot\_GrowthCurve(): Fit and plot a growth curve for luminescence data (Lx/Tx against dose). Function version 1.9.5. In: Kreutzer, S., Dietze, M., Burow, C., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J. (2017). Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.8.0. https://CRAN.R-project.org/package=Luminescence \\ 78 & plot\_Histogram & Plot a histogram with separate error plot & Function plots a predefined histogram with an accompanying error plot as suggested by Rex Galbraith at the UK LED in Oxford 2010. & 0.4.4 & 2016-07-16 & 11:28:11 @@ -243,7 +243,7 @@ 90 & PSL2Risoe.BINfileData & Convert portable OSL data to an Risoe.BINfileData object & Converts an RLum.Analysis object produced by the function read\_PSL2R() to an Risoe.BINfileData object (BETA) . & 0.0.1 & 2017-02-10 & 18:30:04 & Christoph Burow, University of Cologne (Germany)$<$br /$>$ R Luminescence Package Team & Burow, C. (2017). PSL2Risoe.BINfileData(): Convert portable OSL data to an Risoe.BINfileData object. Function version 0.0.1. In: Kreutzer, S., Dietze, M., Burow, C., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J. (2017). Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.8.0. https://CRAN.R-project.org/package=Luminescence \\ - 91 & read\_BIN2R & Import Risoe BIN-file into R & Import a *.bin or a *.binx file produced by a Risoe DA15 and DA20 TL/OSL reader into R. & 0.15.5 & 2017-03-30 & 17:20:45 + 91 & read\_BIN2R & Import Risoe BIN-file into R & Import a *.bin or a *.binx file produced by a Risoe DA15 and DA20 TL/OSL reader into R. & 0.15.5 & 2017-03-30 & 23:05:40 & Sebastian Kreutzer, IRAMAT-CRP2A, Universite Bordeaux Montaigne$<$br /$>$ (France), Margret C. Fuchs, HZDR Freiberg, (Germany)$<$br /$>$ R Luminescence Package Team & Kreutzer, S., Fuchs, M.C., Fuchs, M. (2017). read\_BIN2R(): Import Risoe BIN-file into R. Function version 0.15.5. In: Kreutzer, S., Dietze, M., Burow, C., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J. (2017). Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.8.0. https://CRAN.R-project.org/package=Luminescence \\ 92 & read\_Daybreak2R & Import measurement data produced by a Daybreak TL/OSL reader into R & Import a TXT-file (ASCII file) or a DAT-file (binary file) produced by a Daybreak reader into R. The import of the DAT-files is limited to the file format described for the software TLAPLLIC v.3.2 used for a Daybreak, model 1100. & 0.3.0 & 2017-01-24 & 21:10:47 diff --git a/RLum.BuildResults/Luminescence_0.7.4-Functions_Markdown.md b/RLum.BuildResults/Luminescence_0.7.4-Functions_Markdown.md index 950132941..11245f6ca 100644 --- a/RLum.BuildResults/Luminescence_0.7.4-Functions_Markdown.md +++ b/RLum.BuildResults/Luminescence_0.7.4-Functions_Markdown.md @@ -28,7 +28,7 @@ | calc_gSGC | Calculate De value based on the gSGC by Li et al., 2015 | Function returns De value and De value error using the global standardised growth curve (gSGC) assumption proposed by Li et al., 2015 for OSL dating of sedimentary quartz | 0.1.1 | 2017-01-24 | 21:10:47 | Sebastian Kreutzer, IRAMAT-CRP2A, Universite Bordeaux Montagine (France) - R Luminescence Package Team | Kreutzer, S. (2017). calc_gSGC(): Calculate De value based on the gSGC by Li et al., 2015. Function version 0.1.1. In: Kreutzer, S., Dietze, M., Burow, C., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J. (2017). Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.8.0. https://CRAN.R-project.org/package=Luminescence | | calc_HomogeneityTest | Apply a simple homogeneity test after Galbraith (2003) | A simple homogeneity test for De estimates | 0.2 | 2016-05-02 | 09:36:06 | Christoph Burow, University of Cologne (Germany) - R Luminescence Package Team | Burow, C. (2017). calc_HomogeneityTest(): Apply a simple homogeneity test after Galbraith (2003). Function version 0.2. In: Kreutzer, S., Dietze, M., Burow, C., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J. (2017). Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.8.0. https://CRAN.R-project.org/package=Luminescence | | calc_IEU | Apply the internal-external-uncertainty (IEU) model after Thomsen et al. - (2007) to a given De distribution | Function to calculate the IEU De for a De data set. | 0.1.0 | 2016-05-02 | 09:36:06 | Rachel Smedley, Geography & Earth Sciences, Aberystwyth University - (United Kingdom) Based on an excel spreadsheet and accompanying macro - written by Kristina Thomsen. - R Luminescence Package Team | Smedley, R.K. (2017). calc_IEU(): Apply the internal-external-uncertainty (IEU) model after Thomsen et al. (2007) to a given De distribution. Function version 0.1.0. In: Kreutzer, S., Dietze, M., Burow, C., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J. (2017). Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.8.0. https://CRAN.R-project.org/package=Luminescence | -| calc_Kars2008 | Apply the Kars et al. (2008) model | A function to calculate the expected sample specific fraction of saturation following Kars et al. (2008) and Huntley (2006). | 0.1.0 | 2017-03-30 | 17:20:45 | Georgina King, University of Cologne (Germany), - Christoph Burow, University of Cologne (Germany) - R Luminescence Package Team | King, G., Burow, C. (2017). calc_Kars2008(): Apply the Kars et al. (2008) model. Function version 0.1.0. In: Kreutzer, S., Dietze, M., Burow, C., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J. (2017). Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.8.0. https://CRAN.R-project.org/package=Luminescence | +| calc_Kars2008 | Apply the Kars et al. (2008) model | A function to calculate the expected sample specific fraction of saturation following Kars et al. (2008) and Huntley (2006). | 0.1.0 | 2017-03-30 | 23:05:40 | Georgina King, University of Cologne (Germany), - Christoph Burow, University of Cologne (Germany) - R Luminescence Package Team | King, G., Burow, C. (2017). calc_Kars2008(): Apply the Kars et al. (2008) model. Function version 0.1.0. In: Kreutzer, S., Dietze, M., Burow, C., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J. (2017). Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.8.0. https://CRAN.R-project.org/package=Luminescence | | calc_MaxDose | Apply the maximum age model to a given De distribution | Function to fit the maximum age model to De data. This is a wrapper function that calls calc_MinDose() and applies a similiar approach as described in Olley et al. (2006). | 0.3.1 | 2017-01-24 | 21:10:47 | Christoph Burow, University of Cologne (Germany) Based on a - rewritten S script of Rex Galbraith, 2010 - R Luminescence Package Team | Burow, C. (2017). calc_MaxDose(): Apply the maximum age model to a given De distribution. Function version 0.3.1. In: Kreutzer, S., Dietze, M., Burow, C., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J. (2017). Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.8.0. https://CRAN.R-project.org/package=Luminescence | | calc_MinDose | Apply the (un-)logged minimum age model (MAM) after Galbraith et al. (1999) - to a given De distribution | Function to fit the (un-)logged three or four parameter minimum dose model (MAM-3/4) to De data. | 0.4.4 | 2017-02-24 | 10:30:49 | Christoph Burow, University of Cologne (Germany) Based on a - rewritten S script of Rex Galbraith, 2010 The bootstrap approach is - based on a rewritten MATLAB script of Alastair Cunningham. Alastair - Cunningham is thanked for his help in implementing and cross-checking the - code. - R Luminescence Package Team | Burow, C. (2017). calc_MinDose(): Apply the (un-)logged minimum age model (MAM) after Galbraith et al. (1999) to a given De distribution. Function version 0.4.4. In: Kreutzer, S., Dietze, M., Burow, C., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J. (2017). Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.8.0. https://CRAN.R-project.org/package=Luminescence | | calc_OSLLxTxRatio | Calculate Lx/Tx ratio for CW-OSL curves | Calculate Lx/Tx ratios from a given set of CW-OSL curves assuming late light background subtraction. | 0.7.0 | 2017-02-16 | 15:03:51 | Sebastian Kreutzer, IRAMAT-CRP2A, Universite Bordeaux Montaigne - (France) - R Luminescence Package Team | Kreutzer, S. (2017). calc_OSLLxTxRatio(): Calculate Lx/Tx ratio for CW-OSL curves. Function version 0.7.0. In: Kreutzer, S., Dietze, M., Burow, C., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J. (2017). Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.8.0. https://CRAN.R-project.org/package=Luminescence | @@ -74,11 +74,11 @@ | methods_RLum | methods_RLum | Methods for S3-generics implemented for the package 'Luminescence'. This document summarises all implemented S3-generics. The name of the function is given before the first dot, after the dot the name of the object that is supported by this method is given, e.g. plot.RLum.Data.Curve can be called by plot(object, ...) , where object is the RLum.Data.Curve object. | NA | NA | NA | NA | NA | | model_LuminescenceSignals | Model Luminescence Signals (wrapper) | Wrapper for the function model_LuminescenceSignals from the package RLumModel-package . For the further details and examples please see the manual of this package. | 0.1.3 | 2017-02-10 | 18:30:04 | Johannes Friedrich, University of Bayreuth (Germany), - Sebastian Kreutzer, IRAMAT-CRP2A, Universite Bordeaux Montaige (France), - R Luminescence Package Team | Friedrich, J., Kreutzer, S. (2017). model_LuminescenceSignals(): Model Luminescence Signals (wrapper). Function version 0.1.3. In: Kreutzer, S., Dietze, M., Burow, C., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J. (2017). Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.8.0. https://CRAN.R-project.org/package=Luminescence | | names_RLum | S4-names function for RLum S4 class objects | Function calls object-specific names functions for RLum S4 class objects. | 0.1.0 | 2015-11-29 | 17:27:48 | Sebastian Kreutzer, IRAMAT-CRP2A, Universite Bordeaux Montaigne - (France) - R Luminescence Package Team | Kreutzer, S. (2017). names_RLum(): S4-names function for RLum S4 class objects. Function version 0.1.0. In: Kreutzer, S., Dietze, M., Burow, C., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J. (2017). Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.8.0. https://CRAN.R-project.org/package=Luminescence | -| plot_AbanicoPlot | Function to create an Abanico Plot. | A plot is produced which allows comprehensive presentation of data precision and its dispersion around a central value as well as illustration of a kernel density estimate, histogram and/or dot plot of the dose values. | 0.1.10 | 2017-03-30 | 17:20:45 | Michael Dietze, GFZ Potsdam (Germany), Sebastian Kreutzer, - IRAMAT-CRP2A, Universite Bordeaux Montaigne (France) Inspired by a plot - introduced by Galbraith & Green (1990) - R Luminescence Package Team | Dietze, M., Kreutzer, S. (2017). plot_AbanicoPlot(): Function to create an Abanico Plot.. Function version 0.1.10. In: Kreutzer, S., Dietze, M., Burow, C., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J. (2017). Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.8.0. https://CRAN.R-project.org/package=Luminescence | +| plot_AbanicoPlot | Function to create an Abanico Plot. | A plot is produced which allows comprehensive presentation of data precision and its dispersion around a central value as well as illustration of a kernel density estimate, histogram and/or dot plot of the dose values. | 0.1.10 | 2017-03-30 | 23:05:40 | Michael Dietze, GFZ Potsdam (Germany), Sebastian Kreutzer, - IRAMAT-CRP2A, Universite Bordeaux Montaigne (France) Inspired by a plot - introduced by Galbraith & Green (1990) - R Luminescence Package Team | Dietze, M., Kreutzer, S. (2017). plot_AbanicoPlot(): Function to create an Abanico Plot.. Function version 0.1.10. In: Kreutzer, S., Dietze, M., Burow, C., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J. (2017). Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.8.0. https://CRAN.R-project.org/package=Luminescence | | plot_DetPlot | Create De(t) plot | Plots the equivalent dose (De) in dependency of the chosen signal integral (cf. Bailey et al., 2003). The function is simply passing several arguments to the function plot and the used analysis functions and runs it in a loop. Example: legend.pos for legend position, legend for legend text. | 0.1.1 | 2017-01-24 | 21:10:47 | Sebastian Kreutzer, IRAMAT-CRP2A, Universite Bordeaux Montaigne (France) - R Luminescence Package Team | Kreutzer, S. (2017). plot_DetPlot(): Create De(t) plot. Function version 0.1.1. In: Kreutzer, S., Dietze, M., Burow, C., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J. (2017). Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.8.0. https://CRAN.R-project.org/package=Luminescence | -| plot_DRTResults | Visualise dose recovery test results | The function provides a standardised plot output for dose recovery test measurements. | 0.1.10 | 2017-03-30 | 17:20:45 | Sebastian Kreutzer, IRAMAT-CRP2A, Universite Bordeaux Montaigne - (France), Michael Dietze, GFZ Potsdam (Germany) - R Luminescence Package Team | Kreutzer, S., Dietze, M. (2017). plot_DRTResults(): Visualise dose recovery test results. Function version 0.1.10. In: Kreutzer, S., Dietze, M., Burow, C., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J. (2017). Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.8.0. https://CRAN.R-project.org/package=Luminescence | +| plot_DRTResults | Visualise dose recovery test results | The function provides a standardised plot output for dose recovery test measurements. | 0.1.10 | 2017-03-30 | 23:05:40 | Sebastian Kreutzer, IRAMAT-CRP2A, Universite Bordeaux Montaigne - (France), Michael Dietze, GFZ Potsdam (Germany) - R Luminescence Package Team | Kreutzer, S., Dietze, M. (2017). plot_DRTResults(): Visualise dose recovery test results. Function version 0.1.10. In: Kreutzer, S., Dietze, M., Burow, C., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J. (2017). Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.8.0. https://CRAN.R-project.org/package=Luminescence | | plot_FilterCombinations | Plot filter combinations along with the (optional) net transmission window | The function allows to plot transmission windows for different filters. Missing data for specific wavelenghts are automatically interpolated for the given filter data using the function approx . With that a standardised output is reached and a net transmission window can be shown. | 0.1.0 | 2016-10-18 | 10:21:27 | Sebastian Kreutzer, IRAMAT-CRP2A, Universite Bordeaux Montagine (France) - R Luminescence Package Team | Kreutzer, S. (2017). plot_FilterCombinations(): Plot filter combinations along with the (optional) net transmission window. Function version 0.1.0. In: Kreutzer, S., Dietze, M., Burow, C., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J. (2017). Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.8.0. https://CRAN.R-project.org/package=Luminescence | -| plot_GrowthCurve | Fit and plot a growth curve for luminescence data (Lx/Tx against dose) | A dose response curve is produced for luminescence measurements using a regenerative or additive protocol. The function supports interpolation and extraxpolation to calculate the equivalent dose. | 1.9.5 | 2017-03-30 | 17:20:45 | Sebastian Kreutzer, IRAMAT-CRP2A, Universite Bordeaux Montaigne - (France), Michael Dietze, GFZ Potsdam (Germany) - R Luminescence Package Team | Kreutzer, S., Dietze, M. (2017). plot_GrowthCurve(): Fit and plot a growth curve for luminescence data (Lx/Tx against dose). Function version 1.9.5. In: Kreutzer, S., Dietze, M., Burow, C., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J. (2017). Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.8.0. https://CRAN.R-project.org/package=Luminescence | +| plot_GrowthCurve | Fit and plot a growth curve for luminescence data (Lx/Tx against dose) | A dose response curve is produced for luminescence measurements using a regenerative or additive protocol. The function supports interpolation and extraxpolation to calculate the equivalent dose. | 1.9.5 | 2017-03-30 | 23:05:40 | Sebastian Kreutzer, IRAMAT-CRP2A, Universite Bordeaux Montaigne - (France), Michael Dietze, GFZ Potsdam (Germany) - R Luminescence Package Team | Kreutzer, S., Dietze, M. (2017). plot_GrowthCurve(): Fit and plot a growth curve for luminescence data (Lx/Tx against dose). Function version 1.9.5. In: Kreutzer, S., Dietze, M., Burow, C., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J. (2017). Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.8.0. https://CRAN.R-project.org/package=Luminescence | | plot_Histogram | Plot a histogram with separate error plot | Function plots a predefined histogram with an accompanying error plot as suggested by Rex Galbraith at the UK LED in Oxford 2010. | 0.4.4 | 2016-07-16 | 11:28:11 | Michael Dietze, GFZ Potsdam (Germany), Sebastian Kreutzer, - IRAMAT-CRP2A, Universite Bordeaux Montaigne (France) - R Luminescence Package Team | Dietze, M., Kreutzer, S. (2017). plot_Histogram(): Plot a histogram with separate error plot. Function version 0.4.4. In: Kreutzer, S., Dietze, M., Burow, C., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J. (2017). Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.8.0. https://CRAN.R-project.org/package=Luminescence | | plot_KDE | Plot kernel density estimate with statistics | Plot a kernel density estimate of measurement values in combination with the actual values and associated error bars in ascending order. If enabled, the boxplot will show the usual distribution parameters (median as bold line, box delimited by the first and third quartile, whiskers defined by the extremes and outliers shown as points) and also the mean and standard deviation as pale bold line and pale polygon, respectively. | 3.5.5 | 2017-02-24 | 10:30:49 | Michael Dietze, GFZ Potsdam (Germany), Sebastian Kreutzer, - IRAMAT-CRP2A, Universite Bordeaux Montaigne - R Luminescence Package Team | Dietze, M., Kreutzer, S. (2017). plot_KDE(): Plot kernel density estimate with statistics. Function version 3.5.5. In: Kreutzer, S., Dietze, M., Burow, C., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J. (2017). Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.8.0. https://CRAN.R-project.org/package=Luminescence | | plot_NRt | Visualise natural/regenerated signal ratios | This function creates a Natural/Regenerated signal vs. time (NR(t)) plot as shown in Steffen et al. 2009 | NA | NA | NA | Christoph Burow, University of Cologne (Germany) - | Burow, C. (2017). plot_NRt(): Visualise natural/regenerated signal ratios. In: Kreutzer, S., Dietze, M., Burow, C., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J. (2017). Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.8.0. https://CRAN.R-project.org/package=Luminescence | @@ -92,7 +92,7 @@ | plot_RLum.Results | Plot function for an RLum.Results S4 class object | The function provides a standardised plot output for data of an RLum.Results S4 class object | 0.2.1 | 2017-01-24 | 21:10:47 | Christoph Burow, University of Cologne (Germany), Sebastian Kreutzer, IRAMAT-CRP2A, - Universite Bordeaux Montaigne (France) - R Luminescence Package Team | Burow, C., Kreutzer, S. (2017). plot_RLum.Results(): Plot function for an RLum.Results S4 class object. Function version 0.2.1. In: Kreutzer, S., Dietze, M., Burow, C., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J. (2017). Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.8.0. https://CRAN.R-project.org/package=Luminescence | | plot_ViolinPlot | Create a violin plot | Draws a kernal densiy plot in combination with a boxplot in its middle. The shape of the violin is constructed using a mirrored density curve. This plot is especially designed for cases where the individual errors are zero or to small to be visualised. The idea for this plot is based on the the 'volcano plot' in the ggplot2 package by Hadely Wickham and Winston Chang. The general idea for the Violin Plot seems to be introduced by Hintze and Nelson (1998). | 0.1.3 | 2017-02-10 | 18:30:04 | Sebastian Kreutzer, IRAMAT-CRP2A, Universite Bordeaux Montaigne (France) - R Luminescence Package Team | Kreutzer, S. (2017). plot_ViolinPlot(): Create a violin plot. Function version 0.1.3. In: Kreutzer, S., Dietze, M., Burow, C., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J. (2017). Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.8.0. https://CRAN.R-project.org/package=Luminescence | | PSL2Risoe.BINfileData | Convert portable OSL data to an Risoe.BINfileData object | Converts an RLum.Analysis object produced by the function read_PSL2R() to an Risoe.BINfileData object (BETA) . | 0.0.1 | 2017-02-10 | 18:30:04 | Christoph Burow, University of Cologne (Germany) - R Luminescence Package Team | Burow, C. (2017). PSL2Risoe.BINfileData(): Convert portable OSL data to an Risoe.BINfileData object. Function version 0.0.1. In: Kreutzer, S., Dietze, M., Burow, C., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J. (2017). Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.8.0. https://CRAN.R-project.org/package=Luminescence | -| read_BIN2R | Import Risoe BIN-file into R | Import a *.bin or a *.binx file produced by a Risoe DA15 and DA20 TL/OSL reader into R. | 0.15.5 | 2017-03-30 | 17:20:45 | Sebastian Kreutzer, IRAMAT-CRP2A, Universite Bordeaux Montaigne - (France), Margret C. Fuchs, HZDR Freiberg, (Germany) - R Luminescence Package Team | Kreutzer, S., Fuchs, M.C., Fuchs, M. (2017). read_BIN2R(): Import Risoe BIN-file into R. Function version 0.15.5. In: Kreutzer, S., Dietze, M., Burow, C., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J. (2017). Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.8.0. https://CRAN.R-project.org/package=Luminescence | +| read_BIN2R | Import Risoe BIN-file into R | Import a *.bin or a *.binx file produced by a Risoe DA15 and DA20 TL/OSL reader into R. | 0.15.5 | 2017-03-30 | 23:05:40 | Sebastian Kreutzer, IRAMAT-CRP2A, Universite Bordeaux Montaigne - (France), Margret C. Fuchs, HZDR Freiberg, (Germany) - R Luminescence Package Team | Kreutzer, S., Fuchs, M.C., Fuchs, M. (2017). read_BIN2R(): Import Risoe BIN-file into R. Function version 0.15.5. In: Kreutzer, S., Dietze, M., Burow, C., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J. (2017). Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.8.0. https://CRAN.R-project.org/package=Luminescence | | read_Daybreak2R | Import measurement data produced by a Daybreak TL/OSL reader into R | Import a TXT-file (ASCII file) or a DAT-file (binary file) produced by a Daybreak reader into R. The import of the DAT-files is limited to the file format described for the software TLAPLLIC v.3.2 used for a Daybreak, model 1100. | 0.3.0 | 2017-01-24 | 21:10:47 | Sebastian Kreutzer, IRAMAT-CRP2A, Universite Bordeaux Montaigne (France), - Anotine Zink, C2RMF, Palais du Louvre, Paris (France) - The ASCII-file import is based on a suggestion by Willian Amidon and Andrew Louis Gorin - R Luminescence Package Team | Kreutzer, S., Zink, A. (2017). read_Daybreak2R(): Import measurement data produced by a Daybreak TL/OSL reader into R. Function version 0.3.0. In: Kreutzer, S., Dietze, M., Burow, C., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J. (2017). Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.8.0. https://CRAN.R-project.org/package=Luminescence | | read_PSL2R | Import PSL files to R | Imports PSL files produced by a SUERC portable OSL reader into R (BETA) . | 0.0.1 | 2017-01-24 | 21:10:47 | Christoph Burow, University of Cologne (Germany) - R Luminescence Package Team | Burow, C. (2017). read_PSL2R(): Import PSL files to R. Function version 0.0.1. In: Kreutzer, S., Dietze, M., Burow, C., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J. (2017). Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.8.0. https://CRAN.R-project.org/package=Luminescence | | read_SPE2R | Import Princeton Intruments (TM) SPE-file into R | Function imports Princeton Instruments (TM) SPE-files into R environment and provides RLum objects as output. | 0.1.0 | 2017-02-10 | 18:30:04 | Sebastian Kreutzer, IRAMAT-CRP2A, Universite Bordeaux Montaigne - (France) - R Luminescence Package Team | Kreutzer, S. (2017). read_SPE2R(): Import Princeton Intruments (TM) SPE-file into R. Function version 0.1.0. In: Kreutzer, S., Dietze, M., Burow, C., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J. (2017). Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.8.0. https://CRAN.R-project.org/package=Luminescence | diff --git a/RLum.BuildResults/timings.tab b/RLum.BuildResults/timings.tab new file mode 100644 index 000000000..85fe2c95e --- /dev/null +++ b/RLum.BuildResults/timings.tab @@ -0,0 +1,5 @@ +"user" "system" "elapsed" +"Luminescence" 135.611 6.612 145.713 +"RLumModel" 45.539 3.161 50.78 +"RLumShiny" 30.333 2.194 34.5680000000002 +"TLdating" 46.311 2.539 52.364 diff --git a/RLum.BuildScripts/RLum.PBS_ReverseDependencies.R b/RLum.BuildScripts/RLum.PBS_ReverseDependencies.R index 68d284fce..9803d51ca 100644 --- a/RLum.BuildScripts/RLum.PBS_ReverseDependencies.R +++ b/RLum.BuildScripts/RLum.PBS_ReverseDependencies.R @@ -6,6 +6,7 @@ ### =============================================================================================== ## This script should be run manually after the package has been built + devtools::revdep_check() devtools::revdep_check_save_summary() devtools::revdep_check_print_problems() diff --git a/man/calc_Kars2008.Rd b/man/calc_Kars2008.Rd index 43513cf7f..e8a722bc5 100644 --- a/man/calc_Kars2008.Rd +++ b/man/calc_Kars2008.Rd @@ -120,7 +120,7 @@ in the derivation of (n/N) and (n/N)_SS. \bold{This function has BETA status and should not be used for publication work!} } \section{Function version}{ - 0.1.0 (2017-03-30 17:20:45) + 0.1.0 (2017-03-30 23:05:40) } \examples{ diff --git a/man/plot_AbanicoPlot.Rd b/man/plot_AbanicoPlot.Rd index fd2c66451..49f78e9b3 100644 --- a/man/plot_AbanicoPlot.Rd +++ b/man/plot_AbanicoPlot.Rd @@ -221,7 +221,7 @@ z-scale to specify where ticks are to be drawn by using the parameter \code{zlim}-definition. } \section{Function version}{ - 0.1.10 (2017-03-30 17:20:45) + 0.1.10 (2017-03-30 23:05:40) } \examples{ diff --git a/man/plot_DRTResults.Rd b/man/plot_DRTResults.Rd index 6eb35b731..f9cf928c0 100644 --- a/man/plot_DRTResults.Rd +++ b/man/plot_DRTResults.Rd @@ -90,7 +90,7 @@ Further data and plot arguments can be added by using the appropiate R commands. } \section{Function version}{ - 0.1.10 (2017-03-30 17:20:45) + 0.1.10 (2017-03-30 23:05:40) } \examples{ diff --git a/man/plot_GrowthCurve.Rd b/man/plot_GrowthCurve.Rd index 17df1d8c4..197460f74 100644 --- a/man/plot_GrowthCurve.Rd +++ b/man/plot_GrowthCurve.Rd @@ -159,7 +159,7 @@ To avoid plotting the subtitle information, provide an empty user mtext \code{mt To plot any other subtitle text, use \code{mtext}. } \section{Function version}{ - 1.9.5 (2017-03-30 17:20:45) + 1.9.5 (2017-03-30 23:05:40) } \examples{ diff --git a/man/read_BIN2R.Rd b/man/read_BIN2R.Rd index fc0cf7e2f..5d1a988cc 100644 --- a/man/read_BIN2R.Rd +++ b/man/read_BIN2R.Rd @@ -94,7 +94,7 @@ version number depends on the used Sequence Editor.\cr\cr import.} } \section{Function version}{ - 0.15.5 (2017-03-30 17:20:45) + 0.15.5 (2017-03-30 23:05:40) } \examples{ diff --git a/revdep/.cache.rds b/revdep/.cache.rds deleted file mode 100644 index bb4cf4e26..000000000 Binary files a/revdep/.cache.rds and /dev/null differ diff --git a/revdep/checks.rds b/revdep/checks.rds new file mode 100644 index 000000000..bdd31efeb Binary files /dev/null and b/revdep/checks.rds differ diff --git a/src/Luminescence.so b/src/Luminescence.so new file mode 100755 index 000000000..bf90038ad Binary files /dev/null and b/src/Luminescence.so differ