From 6098701fe5266840c28dfabd606db16cdb07dcf5 Mon Sep 17 00:00:00 2001 From: Neil Shephard Date: Wed, 11 Sep 2024 13:41:26 +0100 Subject: [PATCH 1/5] September 2024 newsletter; LunchBytes October 2024-10-22 --- _events/lunchbytes-2024-10-22.md | 47 ++++++++ _newsletters/2024-09-12-newsletter.md | 167 ++++++++++++++++++++++++++ 2 files changed, 214 insertions(+) create mode 100644 _events/lunchbytes-2024-10-22.md create mode 100644 _newsletters/2024-09-12-newsletter.md diff --git a/_events/lunchbytes-2024-10-22.md b/_events/lunchbytes-2024-10-22.md new file mode 100644 index 00000000..f688808e --- /dev/null +++ b/_events/lunchbytes-2024-10-22.md @@ -0,0 +1,47 @@ +--- +category: lunchbytes +date: 2024-10-21 +published: True +from: "12:00" +to: "13:00" +location: "Google Meet" +speaker: "Romain Thomas" +institute: +title: "LunchBytes: FAIR^2 Training Programme" +image: +slides_url: +--- + +As code and software become an ever bigger part of research (its likely that [around 1/3 of researchers write +code](https://rse.shef.ac.uk/sssurvey/)), coding and other digital skills become ever more important to researchers. The +FAIR for Research Software Principles adapted the _FAIR Guiding Principles for Scientific Data +Management and Stewardship_ to Research Software and provide a framework for the development of code and +software. The range of skills involved in adopting this paradigm shift is diverse and together the Research Software +Engineering (RSE), Data Analytics Service (DAS) and Library teams have developed the FAIR2 Training Programme +which covers most aspects of the training required. + +In this LunchBytes session, Dr Romain Thomas, Head of Research Software Engineering, will give an overview of the +motivation behind the programmes development and introduce the curriculum covered by the FAIR2 Training +Programme, explaining the modular structure of the material and how components build on and are linked to each other. + +### Joining Instructions + +Join on Google meet at: + +By joining with a University of Sheffield google account you will be admitted automatically. + +External attendees are welcome but please read our [Code of Conduct](/community/code_of_conduct) and contact the +organiser first at [romain.thomas@sheffield.ac.uk](mailto:romain.thomas@sheffield.ac.uk). + +### Questions + +We'll use sli.do for questions, link will be circulated during the event. + +### Background Reading + +- Chue Hong et al., FAIR Principles for Research Software (FAIR4RS Principles) + [doi:10.15497/RDA00068](https://doi.org/10.15497/RDA00068) +- Barker et al., ‘Introducing the FAIR Principles for Research Software + [doi:10.1038/s41597-022-01710-x](https://doi.org/10.1038/s41597-022-01710-x) +- Wilkinson et al., ‘The FAIR Guiding Principles for Scientific Data Management and Stewardship + [doi:10.1038/sdata.2016.18](https://doi.org/10.1038/sdata.2016.18) diff --git a/_newsletters/2024-09-12-newsletter.md b/_newsletters/2024-09-12-newsletter.md new file mode 100644 index 00000000..9463ef06 --- /dev/null +++ b/_newsletters/2024-09-12-newsletter.md @@ -0,0 +1,167 @@ +--- +layout: post +title: Month Year Newsletter +editor: Neil Shephard +slug: 2024-09-12-newsletter +date: 2024-09-12T12:00:00Z+0100 +tags: +category: +link: +description: +type: text +--- + +## The University of Sheffield Research Software Engineering Community Newsletter March 2024 + +Welcome to the September 2024 newsletter for the research software community at The University of Sheffield, featuring +news, opportunities, events and training for you. + +### News + +- [The Hidden Ref 2024](https://hidden-ref.org/hidden-ref-competition/) + - Submissions deadline is close (2024-09-13) but still time to nominate yourself or colleagues. + +### Events + +#### Upcoming external events + +- **2024-09-24** [Navigating Challenges in Peer Review: Perspectives from University Presses and + Associations](https://orcid-org.zoom.us/webinar/register/5317237306039/WN_h6eNPA0GRWSDmYdG0yNoKg#/registration) +- **2024-09-27** [The Turing Way Book Dash November 2024](https://forms.gle/YqqzwesxdyFfNLJw8) + +### Research software practice + +- [Guide to Securing Scientific Software](https://zenodo.org/records/8137009) + +### Equality, Diversity and Inclusion + +- [Getting Started with the RSE Movement within your Organization: A Guide for Individuals](https://zenodo.org/records/10436166) + +### Articles, Blogs, Papers & Podcasts + +#### Articles & Blogs + +- [Python Virtualenvwrapper](https://rse.shef.ac.uk/blog/2024-08-13-python-virtualenvwrapper/) + - RSE Team member Neil Shephard introduces the Virtualenvwrapper and shares a few useful tips to make using it easier. +- [Getting Started with Open Research](https://doi.org/10.15131/shef.data.26379253) + - The University of Sheffield Library, in conjunction with RSE and Data Analytics members have produced a new handbook + on open research. + +#### Papers + +- [Twelve quick tips for software + design](https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1009809) +- [Ten simple rules for recognizing data and software contributions in hiring, promotion, and + tenure](https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1012296) +- **Pre-print** [Prompto: An open source library for asynchronous querying of LLM + endpoints](https://arxiv.org/abs/2408.11847) + +#### Podcasts + +- [Code4Thought : Beyond Open Research](https://codeforthought.buzzsprout.com/1326658/15611170-en-beyond-open-research-imperial-college) + +### Training + +The [FAIR2 for Research Software Training Programme](https://rse.shef.ac.uk/training/fair4rs/) has been developed +by the RSE, Data Analytics Service and Library teams and will be launched in October. An introduction to the programme +will be given in a [LunchBytes session 2024-10-22](../events/lunchbytes-2024-10-22.html). Keep an eye on our +[Training](https://rse.shef.ac.uk/training/) page and join our [mailing +list](https://groups.google.com/a/sheffield.ac.uk/g/rse-group) to hear about these courses and other events. + +### Funding Opportunities + +- [UKRI DRI: digital research infrastructure skills hubs for accelerated compute – UKRI](https://www.ukri.org/opportunity/ukri-dri-digital-research-infrastructure-skills-hubs-for-accelerated-compute/) + - This funding opportunity through the UK Research and Innovation (UKRI) Digital Research Infrastructure (DRI) + programme will support the development of two national hubs for digital Research Technology Professionals + (RTP). These hubs will enable skills development, education and training for the digital professionals within + accelerated and large-scale compute who support science across the entire UKRI remit. +- [UKRI DRI: Championing knowledge exchange for UK computational science – + UKRI](https://www.ukri.org/opportunity/ukri-dri-championing-knowledge-exchange-for-uk-computational-science/) + - This funding opportunity through the UK Research and Innovation (UKRI) Digital Research Infrastructure (DRI) + programme will support the development of one Knowledge Exchange and Communication (KEC) NetworkPlus. The + NetworkPlus will co-ordinate and enhance knowledge exchange of computational research. It will set good practice for + dissemination of software developments in UK science across the UKRI remit. +- [Collaborative Computational Communities: towards new CCPs – + UKRI](https://www.ukri.org/opportunity/collaborative-computational-communities-towards-new-ccps/) + - Apply for funding to create a new collaborative community, leading to a viable plan for a new Collaborative + Computational Project (CCP) in the future. This funding enables the creation of a published roadmap and follow-on + technical scoping activities and a final report. Technical and operational support from the Computational Science + Centre for Research Communities (CoSeC) is available at no additional cost. + +#### Jobs + +There are two positions within the University of Sheffield currently being advertised. + +- [Data Technical Lead at University of Sheffield](https://www.jobs.ac.uk/job/DJM932/data-technical-lead) +- [Research Software Engineer in AI and Machine Learning at University of + Sheffield](https://www.jobs.ac.uk/job/DJL697/research-software-engineer-in-ai-and-machine-learning) + +Check for advertised RSE and RSE-adjacent roles at the [RSE society's vacancies +board](https://society-rse.org/careers/vacancies/). + +### Community + +#### Digital Research Practice Support Community + +The DRPS community is a group for people that support researchers in carrying out research in the digital age. Meetings +are held monthly, with discussions around events, training and opportunities related to the field. + +You can join the google group +[here](https://groups.google.com/u/1/a/sheffield.ac.uk/g/digital-research-practice-support-community-group/about) to +stay informed. + +The next meeting is scheduled for 2pm on Wednesday 18th September 2024. + +#### LunchBytes + +[LunchBytes](https://rse.shef.ac.uk/community/lunch-bytes/) are short talks from the research community on research +software, data, and infrastructure. + +##### LunchBytes needs YOU + +LunchBytes are organised by and for the research software community at The University of Sheffield. If you'd like to +curate a session on a topic or present something, get in touch by emailing +[lunchbytes-organisers-group@sheffield.ac.uk](mailto:lunchbytes-organisers-group@sheffield.ac.uk) or suggest topics +[on the jamboard](https://jamboard.google.com/d/1-51cRf0pwZl8O10CnLeJGAqKcnbww-QGaYjszFK-H38/). + +### Support + +#### Code Clinics + +Why not come to a [Code +Clinic](https://docs.google.com/forms/d/e/1FAIpQLScGXS55qjU0D0Zcz-KHOVcNTahcr3YC3H0OpoKBo3lWXWED5A/viewform)? We're keen +to help you. + +Code Clinics are fortnightly supported sessions run by the RSE team and IT Services’ [Research +IT](https://www.sheffield.ac.uk/it-services/research) team. They are open to anyone at TUoS writing code for research to +get help with programming problems and general advice on best practices. + +At each session, members of the RSE and/or Research IT teams will be available to review code, advise, troubleshoot, and +suggest ways to improve your computational workflows. + +#### Research IT HPC Drop In + +HPC Drop-In sessions are providing assistance with HPC related user issues such as challenges in scaling an application +from desktop to supercomputer. We are considering extending the number of our sessions to two or three weekly. These +interactive sessions could provide a better interface with our users than our non-interactive ticketing system. These +sessions are advertised on the [HPC mailing list](https://groups.google.com/u/1/a/sheffield.ac.uk/g/hpc). + +#### Research IT Consultations + +Alongside the HPC Drop-In sessions, Research IT are also running one to one consultations to solve in depth user +specific problems. These consultations can be booked via our webpage. If you are interested please visit the following +link: . + +## Sheffield RSE Team + +The Sheffield RSE Team aims to [collaborate](https://rse.shef.ac.uk/collaboration/) with you to help improve your +research software. They can [provide dedicated staff](https://rse.shef.ac.uk/collaboration/provision/) to ensure that +you can deliver excellent research software engineering on your research projects. + +## Research IT + +[Research IT](https://students.sheffield.ac.uk/it-services/research) directly supports research, both academic and +commercial. We provide large scale HPC systems, advice on everything from statistics to ML to data pipelines and +training for both students and staff. + +Working with academics, our staff are embedded within research groups on both long and short term engagements. From ae4c3ac1b9e50d0ac345b181040166f2a687cc0a Mon Sep 17 00:00:00 2001 From: Neil Shephard Date: Thu, 12 Sep 2024 09:19:44 +0100 Subject: [PATCH 2/5] Update _events/lunchbytes-2024-10-22.md Co-authored-by: Robert Chisholm --- _events/lunchbytes-2024-10-22.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/_events/lunchbytes-2024-10-22.md b/_events/lunchbytes-2024-10-22.md index f688808e..74755425 100644 --- a/_events/lunchbytes-2024-10-22.md +++ b/_events/lunchbytes-2024-10-22.md @@ -35,7 +35,7 @@ organiser first at [romain.thomas@sheffield.ac.uk](mailto:romain.thomas@sheffiel ### Questions -We'll use sli.do for questions, link will be circulated during the event. +We'll use [sli.do](sli.do) for questions, link will be circulated during the event. ### Background Reading From cdc4e4738c0475d6e59f7f4134cf567c72da7686 Mon Sep 17 00:00:00 2001 From: Neil Shephard Date: Thu, 12 Sep 2024 09:21:40 +0100 Subject: [PATCH 3/5] chore: Addressing PR feedback Thanks @robadob and @ubdbra001 --- _newsletters/2024-09-12-newsletter.md | 14 +++++++------- 1 file changed, 7 insertions(+), 7 deletions(-) diff --git a/_newsletters/2024-09-12-newsletter.md b/_newsletters/2024-09-12-newsletter.md index 9463ef06..edd65ace 100644 --- a/_newsletters/2024-09-12-newsletter.md +++ b/_newsletters/2024-09-12-newsletter.md @@ -1,6 +1,6 @@ --- layout: post -title: Month Year Newsletter +title: September 2024 Newsletter editor: Neil Shephard slug: 2024-09-12-newsletter date: 2024-09-12T12:00:00Z+0100 @@ -11,7 +11,7 @@ description: type: text --- -## The University of Sheffield Research Software Engineering Community Newsletter March 2024 +## The University of Sheffield Research Software Engineering Community Newsletter September 2024 Welcome to the September 2024 newsletter for the research software community at The University of Sheffield, featuring news, opportunities, events and training for you. @@ -92,9 +92,11 @@ list](https://groups.google.com/a/sheffield.ac.uk/g/rse-group) to hear about the There are two positions within the University of Sheffield currently being advertised. -- [Data Technical Lead at University of Sheffield](https://www.jobs.ac.uk/job/DJM932/data-technical-lead) +- [Data Technical Lead at University of Sheffield](https://www.jobs.ac.uk/job/DJM932/data-technical-lead) (Closes 26th + September 2024) - [Research Software Engineer in AI and Machine Learning at University of - Sheffield](https://www.jobs.ac.uk/job/DJL697/research-software-engineer-in-ai-and-machine-learning) + Sheffield](https://www.jobs.ac.uk/job/DJL697/research-software-engineer-in-ai-and-machine-learning) (Closes 25th + September 2024) Check for advertised RSE and RSE-adjacent roles at the [RSE society's vacancies board](https://society-rse.org/careers/vacancies/). @@ -128,9 +130,7 @@ curate a session on a topic or present something, get in touch by emailing #### Code Clinics -Why not come to a [Code -Clinic](https://docs.google.com/forms/d/e/1FAIpQLScGXS55qjU0D0Zcz-KHOVcNTahcr3YC3H0OpoKBo3lWXWED5A/viewform)? We're keen -to help you. +Why not come to a [Code Clinic](https://rse.shef.ac.uk/support/code-clinic/)? We're keen to help you. Code Clinics are fortnightly supported sessions run by the RSE team and IT Services’ [Research IT](https://www.sheffield.ac.uk/it-services/research) team. They are open to anyone at TUoS writing code for research to From 35c2c4b3f34f5a0a71783e70471dcd3214fb152f Mon Sep 17 00:00:00 2001 From: Neil Shephard Date: Thu, 12 Sep 2024 13:48:04 +0100 Subject: [PATCH 4/5] Update _events/lunchbytes-2024-10-22.md Co-authored-by: T D James --- _events/lunchbytes-2024-10-22.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/_events/lunchbytes-2024-10-22.md b/_events/lunchbytes-2024-10-22.md index 74755425..6863190f 100644 --- a/_events/lunchbytes-2024-10-22.md +++ b/_events/lunchbytes-2024-10-22.md @@ -1,6 +1,6 @@ --- category: lunchbytes -date: 2024-10-21 +date: 2024-10-22 published: True from: "12:00" to: "13:00" From 8b8b67f292137aec817d74c1203e1dde9f885a6c Mon Sep 17 00:00:00 2001 From: Neil Shephard Date: Thu, 12 Sep 2024 13:48:17 +0100 Subject: [PATCH 5/5] Update _events/lunchbytes-2024-10-22.md Co-authored-by: T D James --- _events/lunchbytes-2024-10-22.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/_events/lunchbytes-2024-10-22.md b/_events/lunchbytes-2024-10-22.md index 6863190f..716bc8ff 100644 --- a/_events/lunchbytes-2024-10-22.md +++ b/_events/lunchbytes-2024-10-22.md @@ -12,7 +12,7 @@ image: slides_url: --- -As code and software become an ever bigger part of research (its likely that [around 1/3 of researchers write +As code and software become an ever bigger part of research (it's likely that [around 1/3 of researchers write code](https://rse.shef.ac.uk/sssurvey/)), coding and other digital skills become ever more important to researchers. The FAIR for Research Software Principles adapted the _FAIR Guiding Principles for Scientific Data Management and Stewardship_ to Research Software and provide a framework for the development of code and