diff --git a/VERSION b/VERSION
index 5cc4e72..870328a 100644
--- a/VERSION
+++ b/VERSION
@@ -1 +1 @@
-master-v0.9
\ No newline at end of file
+master-v0.9.1
\ No newline at end of file
diff --git a/flows/api/__init__.py b/flows/api/__init__.py
index dbcdd0f..8ad4638 100644
--- a/flows/api/__init__.py
+++ b/flows/api/__init__.py
@@ -7,6 +7,6 @@
 from .catalogs import get_catalog, get_catalog_missing
 from .sites import get_site, get_all_sites
 from .photometry_api import get_photometry, upload_photometry
-from .set_photometry_status import set_photometry_status
+from .set_photometry_status import set_photometry_status, cleanup_photometry_status
 from .filters import get_filters
 from .lightcurves import get_lightcurve
diff --git a/flows/api/set_photometry_status.py b/flows/api/set_photometry_status.py
index 3aeb3be..b0fc572 100644
--- a/flows/api/set_photometry_status.py
+++ b/flows/api/set_photometry_status.py
@@ -48,3 +48,39 @@ def set_photometry_status(fileid, status):
 		raise RuntimeError(res)
 
 	return True
+
+#--------------------------------------------------------------------------------------------------
+def cleanup_photometry_status():
+	"""
+	Perform a cleanup of the photometry status indicator.
+
+	This will change all processes still marked as "running"
+	to "abort" if they have been running for more than a day.
+
+	.. codeauthor:: Rasmus Handberg <rasmush@phys.au.dk>
+	"""
+	# Validate the input:
+	logger = logging.getLogger(__name__)
+
+	# Get API token from config file:
+	config = load_config()
+	i_am_pipeline = config.getboolean('api', 'pipeline', fallback=False)
+	if not i_am_pipeline:
+		logger.debug("Not setting status since user is not pipeline")
+		return False
+
+	# Get API token from config file:
+	token = config.get('api', 'token', fallback=None)
+	if token is None:
+		raise RuntimeError("No API token has been defined")
+
+	# Send HTTP request to FLOWS server:
+	r = requests.get('https://flows.phys.au.dk/api/cleanup_photometry_status.php',
+		headers={'Authorization': 'Bearer ' + token})
+	r.raise_for_status()
+	res = r.text.strip()
+
+	if res != 'OK':
+		raise RuntimeError(res)
+
+	return True
diff --git a/run_photometry.py b/run_photometry.py
index 1c7cac4..4614a6b 100644
--- a/run_photometry.py
+++ b/run_photometry.py
@@ -128,6 +128,13 @@ def main():
 	logger.propagate = False
 	logger.setLevel(logging_level)
 
+	# If we have started a new processing, perform a cleanup of the
+	# photometry status indicator. This will change all processes
+	# still marked as "running" to "abort" if they have been running
+	# for more than a day:
+	if args.autoupload:
+		api.cleanup_photometry_status()
+
 	if args.fileid is not None:
 		# Run the specified fileids:
 		fileids = args.fileid