adjusted the readme

Author: dameyerdave

README.md

@@ -46,33 +46,46 @@ git submodule update --init --recursive
 
 ## Configure your environment
 
+### Make sure you are in the `docker` group
+
+```bash
+usermod -aG docker <username>
+```
+
 ### Make the `seqrepo` database available locally
 
 ```bash
+sudo mkdir -m 777 -p /usr/local/share/seqrepo
 cd seqrepo
 make
 ```
 
-### Download the harvester resources
-
-To download the harvester resources you need to have an access token to onkokb as well as for bioontology.
+### Create a `.env` file from the template
 
 ```bash
-cd g2p-aggregator/data
-make
+cp .env.TEMPLATE .env
 ```
 
-Also add the access tokens to your `.env` file.
+### Set proper values in your `.env` file.
 
 ```bash
+...
 BIOONTOLOGY_API_KEY=xxxxxxxx-xxxx-xxxx-xxxx-xxxxxxxxxxxx
 ONCOKB_API_KEY=xxxxxxxx-xxxx-xxxx-xxxx-xxxxxxxxxxxx
 ```
 
-### Populate the VEP cache
+### Download the harvester resources
+
+To download the harvester resources you need to have an access token to onkokb as well as for bioontology.
 
 ```bash
 ./dc_harvester.sh build harvester
+./dc_harvester.sh run --rm harvester /bin/sh -c 'cd /data; make'
+```
+
+### Populate the VEP cache
+
+```bash
 ./dc_harvester.sh run --rm harvester /bin/sh -c 'scripts/populate_vep_cache.sh'
 ```