Update workflows and Dockerfiles to use recursive submodule cloning

Author: TLCFEM

.github/workflows/coverage.yml

@@ -14,10 +14,12 @@ jobs:
           sudo apt-get update && sudo apt-get install -y cmake git g++ libtbb-dev libmpfr-dev libgmp-dev libpython3-dev python3 python3-distutils
       - name: Clone
         uses: actions/checkout@v4
+        with:
+          fetch-depth: 0
+          submodules: true
       - name: Compile
         run: |
           git config --global --add safe.directory /__w/vpmr/vpmr
-          git submodule update --init --recursive
           mkdir build && cd build && cmake -DCMAKE_BUILD_TYPE=Debug ..
           make -j"$(nproc)"
           ./vpmr -h

.github/workflows/release.yml

@@ -18,10 +18,12 @@ jobs:
           apt-get update && apt-get install -y cmake git g++ libtbb-dev libmpfr-dev libgmp-dev libpython3-dev python3 python3-distutils wget gtk-update-icon-cache
       - name: Clone
         uses: actions/checkout@v4
+        with:
+          fetch-depth: 0
+          submodules: true
       - name: Compile
         run: |
           git config --global --add safe.directory /__w/vpmr/vpmr
-          git submodule update --init --recursive
           cd eigen && git apply ../patch_size.patch && cd ..
           mkdir build && cd build && cmake -DCMAKE_BUILD_TYPE=Release ..
           make -j"$(nproc)"
@@ -68,7 +70,7 @@ jobs:
           cat AppImageBuilder.yml
       - name: Package
         run: |
-          wget -q https://github.com/linuxdeploy/linuxdeploy/releases/download/1-alpha-20220822-1/linuxdeploy-x86_64.AppImage
+          wget -q https://github.com/linuxdeploy/linuxdeploy/releases/download/1-alpha-20250213-2/linuxdeploy-x86_64.AppImage
           chmod +x linuxdeploy-x86_64.AppImage
           wget -q https://github.com/AppImageCrafters/appimage-builder/releases/download/v1.1.0/appimage-builder-1.1.0-x86_64.AppImage
           chmod +x appimage-builder-1.1.0-x86_64.AppImage

.github/workflows/wheels.yml

@@ -11,9 +11,11 @@ jobs:
     steps:
       - name: Checkout
         uses: actions/checkout@v4
+        with:
+          fetch-depth: 0
+          submodules: true
       - name: Setup
         run: |
-          git submodule update --init --recursive
           cd eigen && git apply ../patch_size.patch && cd ..
       - name: Build
         run: pipx run build --sdist
@@ -48,9 +50,11 @@ jobs:
     steps:
       - name: Checkout
         uses: actions/checkout@v4
+        with:
+          fetch-depth: 0
+          submodules: true
       - name: Setup
         run: |
-          git submodule update --init --recursive
           cd eigen && git apply ../patch_size.patch && cd ..
       - name: CI Build Wheel macos-14
         if: matrix.os == 'macos-14'

.github/workflows/windows.yml

@@ -19,13 +19,15 @@ jobs:
           install: git mingw-w64-x86_64-cmake mingw-w64-x86_64-tbb mingw-w64-x86_64-gcc mingw-w64-x86_64-ninja mingw-w64-x86_64-gmp mingw-w64-x86_64-mpfr mingw-w64-x86_64-7zip
       - name: Clone
         uses: actions/checkout@v4
+        with:
+          fetch-depth: 0
+          submodules: true
       - name: Version
         run: |
           echo ("VPMR_VERSION="+(get-date -format "yyMMdd")) >> $env:GITHUB_ENV
       - name: Compile
         shell: msys2 {0}
         run: |
-          git submodule update --init --recursive
           cd eigen && git apply --ignore-space-change --ignore-whitespace ../patch_size.patch && cd ..
           mkdir build && cd build
           cmake -G Ninja -DCMAKE_BUILD_TYPE=Release ..

Dockerfile

@@ -1,16 +1,15 @@
-FROM ubuntu:22.04 as build
+FROM ubuntu:22.04 AS build
 
 RUN apt-get update -y && apt-get install -y cmake git g++ libtbb-dev libmpfr-dev libgmp-dev
 
-RUN git clone --depth 1 https://github.com/TLCFEM/vpmr.git
+RUN git clone --recurse-submodules --depth 1 https://github.com/TLCFEM/vpmr.git
 
 WORKDIR /vpmr
 
-RUN git submodule update --init --recursive
 RUN cd eigen && git apply ../patch_size.patch && cd ..
 RUN mkdir build && cd build && cmake -DCMAKE_BUILD_TYPE=Release .. && make
 
-FROM ubuntu:22.04 as runtime
+FROM ubuntu:22.04 AS runtime
 
 RUN apt-get update -y && apt-get install -y libtbb12 libmpfr6 libgmp10 && apt-get clean -y
 

README.md

@@ -239,10 +239,8 @@ WSL.
 # install necessary packages
 pacman -S git mingw-w64-x86_64-cmake mingw-w64-x86_64-tbb mingw-w64-x86_64-gcc mingw-w64-x86_64-ninja mingw-w64-x86_64-gmp mingw-w64-x86_64-mpfr
 # clone the repository
-git clone --depth 1 https://github.com/TLCFEM/vpmr.git
-# initialise submodules
+git clone --recurse-submodules --depth 1 https://github.com/TLCFEM/vpmr.git
 cd vpmr
-git submodule update --init --recursive
 # apply patch to enable parallel evaluation of some loops in SVD
 cd eigen && git apply --ignore-space-change --ignore-whitespace ../patch_size.patch && cd ..
 # configure and compile
@@ -257,9 +255,8 @@ The following is based on Fedora.
 ```bash
 sudo dnf install gcc g++ gfortran cmake git -y
 sudo dnf install tbb-devel mpfr-devel gmp-devel -y
-git clone --depth 1 https://github.com/TLCFEM/vpmr.git
+git clone --recurse-submodules --depth 1 https://github.com/TLCFEM/vpmr.git
 cd vpmr
-git submodule update --init --recursive
 cd eigen && git apply --ignore-space-change --ignore-whitespace ../patch_size.patch && cd ..
 cmake -DCMAKE_BUILD_TYPE=Release .
 make

resource/Dockerfile

@@ -2,9 +2,9 @@ FROM alpine:3 AS builder
 
 RUN apk add make cmake git g++ onetbb-dev mpfr-dev gmp-dev
 
-RUN git clone --depth 1 https://github.com/TLCFEM/vpmr.git
+RUN git clone --recurse-submodules --depth 1 https://github.com/TLCFEM/vpmr.git
 WORKDIR /vpmr
-RUN git submodule update --init --recursive && cd eigen && git apply --ignore-space-change --ignore-whitespace ../patch_size.patch && cd .. && mkdir build && cd build && cmake -DCMAKE_BUILD_TYPE=Release .. && make
+RUN cd eigen && git apply --ignore-space-change --ignore-whitespace ../patch_size.patch && cd .. && mkdir build && cd build && cmake -DCMAKE_BUILD_TYPE=Release .. && make
 
 FROM alpine:3 AS runtime
 RUN apk add onetbb mpfr