From c0a9efb3f5864bb7ef3924903a56dec505bd3457 Mon Sep 17 00:00:00 2001
From: Farhan-Faisal <farhan.faisal@mail.utoronto.ca>
Date: Thu, 12 Dec 2024 15:22:27 -0800
Subject: [PATCH 1/4] simplified docker

---
 Dockerfile                   |   3 ---
 docs/.index 2.html.icloud    | Bin 0 -> 162 bytes
 report/.report 2.html.icloud | Bin 0 -> 163 bytes
 3 files changed, 3 deletions(-)
 create mode 100644 docs/.index 2.html.icloud
 create mode 100644 report/.report 2.html.icloud

diff --git a/Dockerfile b/Dockerfile
index fc3cb54..4837f6a 100644
--- a/Dockerfile
+++ b/Dockerfile
@@ -8,9 +8,6 @@ USER root
 RUN sudo apt update \
     && sudo apt install -y lmodern
 
-RUN sudo apt-get update \
-    && sudo apt-get install -y make
-
 USER $NB_UID
 
 RUN mamba update --quiet --file /tmp/conda-linux-64.lock \
diff --git a/docs/.index 2.html.icloud b/docs/.index 2.html.icloud
new file mode 100644
index 0000000000000000000000000000000000000000..f8232bf9ea199debae59bd3f9bb667e0c454e9f3
GIT binary patch
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KV29E$su}<^H7ltA

literal 0
HcmV?d00001

diff --git a/report/.report 2.html.icloud b/report/.report 2.html.icloud
new file mode 100644
index 0000000000000000000000000000000000000000..083e2bdd4190de73dc1bbf4a3b161ae258ffff8d
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From 283341eb25fd3f1b76a65193da4e436e566cfae0 Mon Sep 17 00:00:00 2001
From: Farhan-Faisal <farhan.faisal@mail.utoronto.ca>
Date: Thu, 12 Dec 2024 15:23:27 -0800
Subject: [PATCH 2/4] simplified docker

---
 docs/.index 2.html.icloud    | Bin 162 -> 0 bytes
 report/.report 2.html.icloud | Bin 163 -> 0 bytes
 report/.report.html.icloud   | Bin 161 -> 0 bytes
 3 files changed, 0 insertions(+), 0 deletions(-)
 delete mode 100644 docs/.index 2.html.icloud
 delete mode 100644 report/.report 2.html.icloud
 delete mode 100644 report/.report.html.icloud

diff --git a/docs/.index 2.html.icloud b/docs/.index 2.html.icloud
deleted file mode 100644
index f8232bf9ea199debae59bd3f9bb667e0c454e9f3..0000000000000000000000000000000000000000
GIT binary patch
literal 0
HcmV?d00001

literal 162
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zMaiill?5QFn9RJC)CvV7y^NCF93cjUH+t~`GFTM{rKXqWBo=Y-%jkQB$1s2aBO`=n
KV29E$su}<^H7ltA

diff --git a/report/.report 2.html.icloud b/report/.report 2.html.icloud
deleted file mode 100644
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literal 0
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diff --git a/report/.report.html.icloud b/report/.report.html.icloud
deleted file mode 100644
index d0b2e1cdb2b8d84177d6c9bd6b884ae8b33cdd84..0000000000000000000000000000000000000000
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literal 0
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Jhte>r3IH%2EAjvU


From 8298ca39f9a149c78408b036c89eb7eed3649f39 Mon Sep 17 00:00:00 2001
From: Farhan-Faisal <farhan.faisal@mail.utoronto.ca>
Date: Thu, 12 Dec 2024 16:05:52 -0800
Subject: [PATCH 3/4] README licence + README dev commands + Dockerfile update
 + Make dependency

---
 .gitignore                               |   2 +-
 README.md                                |  15 +++++++++------
 docker-compose.yml                       |   4 ++--
 docs/report.pdf                          | Bin 329892 -> 329890 bytes
 report/.report.html.icloud               | Bin 0 -> 161 bytes
 report/report.pdf                        | Bin 329892 -> 329890 bytes
 results/models/wine_random_search.pickle | Bin 16348 -> 16348 bytes
 results/tables/random_search.csv         |   2 +-
 8 files changed, 13 insertions(+), 10 deletions(-)
 create mode 100644 report/.report.html.icloud

diff --git a/.gitignore b/.gitignore
index 2396cf6..8b118df 100644
--- a/.gitignore
+++ b/.gitignore
@@ -1,4 +1,4 @@
-/.ipynb_checkpoints
+*.ipynb_checkpoints
 /analysis/.ipynb_checkpoints/
 /report/.ipynb_checkpoints/
 /results/figures/.ipynb_checkpoints
diff --git a/README.md b/README.md
index fd9a515..8ed9df5 100644
--- a/README.md
+++ b/README.md
@@ -74,20 +74,20 @@ where you launched the container, and then type `docker compose rm`
 ```
    python scripts/download.py \
       --id 186 \
-      --save_to ./data/wine.csv
+      --save_to ./data/raw/wine.csv
 
    python scripts/clean_n_split_data.py \
-      --raw-data ./data/wine.csv
+      --raw-data ./data/raw/wine.csv
    
    python scripts/validation_before_split.py \
       --file_name wine.csv \
-      --data_path ./data/
+      --data_path ./data/raw
 
 ```
 4.2 Run EDA
 ```
    python scripts/eda_n_correlation_check.py \
-      --train-file ./data/wine_train.csv \
+      --train-file ./data/proc/wine_train.csv \
       --output-img ./results/figures \
       --output-table ./results/tables
 ```
@@ -97,8 +97,8 @@ where you launched the container, and then type `docker compose rm`
       --pipe-to ./results/models
 
    python scripts/model_evaluation_wine_predictor.py \
-      --train-data ./data/wine_train.csv \
-      --test-data ./data/wine_test.csv \
+      --train-data ./data/proc/wine_train.csv \
+      --test-data ./data/proc/wine_test.csv \
       --pipeline-path ./results/models/wine_pipeline.pickle \
       --table-to ./results/tables \
       --plot-to ./results/figures
@@ -109,5 +109,8 @@ where you launched the container, and then type `docker compose rm`
    quarto render report/report.qmd --to pdf
 ```
 
+# License
+This project was created with the [`MIT License`](LICENSE.md)
+
 # References
 Cortez P, Cerdeira A, Almeida F, Matos T, Reis J. Wine Quality [dataset]. 2009. UCI Machine Learning Repository. Available from: https://doi.org/10.24432/C56S3T.
diff --git a/docker-compose.yml b/docker-compose.yml
index 3b95c0b..1d048d6 100644
--- a/docker-compose.yml
+++ b/docker-compose.yml
@@ -4,8 +4,8 @@ services:
     ports:
       - "8888:8888" 
     volumes:
-      - "${PWD}:/app/data"
-    working_dir: /app
+      - "${PWD}:/app/data" 
+    working_dir: /app/data
     deploy:
       resources:
         limits:
diff --git a/docs/report.pdf b/docs/report.pdf
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diff --git a/results/models/wine_random_search.pickle b/results/models/wine_random_search.pickle
index aa2d298f913468e79bc350dd528593d41e39cfb9..26662aad014632f876480b47ac17c83b3bd3d109 100644
GIT binary patch
delta 363
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delta 363
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diff --git a/results/tables/random_search.csv b/results/tables/random_search.csv
index b5e30c4..b8ec370 100644
--- a/results/tables/random_search.csv
+++ b/results/tables/random_search.csv
@@ -2,4 +2,4 @@
 mean_train_score,0.9875779986984037,0.9873192686470664,0.9887321572718368,0.9882197254580379,0.9883474962027348,0.9870566844281605,0.9880919482052322,0.9870566844281605,0.9864183082552028,0.9861637573491556
 mean_test_score,0.9885928776559425,0.9885928776559425,0.9885821459956146,0.988576762777796,0.988576762777796,0.9880680139186435,0.9880653223097344,0.9870318213202898,0.9855028900889848,0.9844799953502902
 param_logisticregression__C,1.2665709946616681,0.9159332036121722,9.15226100278092,2.4713734184878824,2.74750150868112,0.7017992831138442,2.342391466254441,0.6084642077147051,0.37348973478010344,0.28425159292991603
-mean_fit_time,0.8944474697113037,0.623142671585083,0.9552007675170898,1.446831512451172,0.8496040344238281,0.7155133247375488,0.9875524997711181,0.5591573238372802,1.4225006580352784,0.7792784214019776
+mean_fit_time,0.4468091487884521,0.40517253875732423,0.6185922622680664,0.7212271690368652,0.47739248275756835,0.5206932544708252,0.590698528289795,0.40631418228149413,0.6384647846221924,0.5607413291931153

From 119e66c9c678f4fb7c6465323f793a482b5baaf2 Mon Sep 17 00:00:00 2001
From: Farhan-Faisal <farhan.faisal@mail.utoronto.ca>
Date: Thu, 12 Dec 2024 16:08:11 -0800
Subject: [PATCH 4/4] gitignore update + Test command included

---
 tests/README | 5 +++++
 1 file changed, 5 insertions(+)
 create mode 100644 tests/README

diff --git a/tests/README b/tests/README
new file mode 100644
index 0000000..5bf749b
--- /dev/null
+++ b/tests/README
@@ -0,0 +1,5 @@
+# Random Search Test
+pytest -v test_random_search.py \
+    --train_data=../data/proc/wine_train.csv \
+    --test_data=../data/proc/wine_test.csv \
+    --pipeline_path=../results/models/wine_pipeline.pickle