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Maternal Health Classification Project

Author: Shannon Pflueger, Nelli Hovhannisyan, Joseph Lim

Side Note: Almost all feedbacks which were applicable were done. There was also a feedback of violating golden rule, which was addressed when splitting the code into scripts (Milestone 2)

Milestone 1 Feedbacks

Feedback 1: Abstract/summary is missing

  • URL: Commit
  • Commit: 2cf235395ec415a52a87b8e7b273d5f343c9df35
  • Commit Messages: Added summary and general info on maternal health
  • Pull Request: PR #64
  • Addressed By: Shannon Pflueger

Feedback 2: The discussion could be more thorough

  • Reflect on the impact of your findings in real practice. For example, what does an 80% accuracy rate mean for clinicians? Should false positives or false negatives be prioritized?
  • URL: Commit
  • Commit: 333a878
  • Commit Messages: Updated script and report with confusion matrix
  • Pull Request: PR #90
  • Addressed By: Joseph Lim

Feedback 3: Improve clarity of "About" section

  • Add an explanation of what "maternal health risk" means.
  • URL: Commit
  • Commit: 991ee0c327c959f920e78299b2d29df1f3e0c520
  • Commit Messages: Added summary and general info on maternal health
  • Pull Request: PR #64
  • Addressed By: Shannon Pflueger

Feedback 4: Missing reproducibility instructions

  • Analysis could not be run due to missing instructions.
  • URL: Commit
  • Commit: 01e8bba49c295fbbd0c41b1edb96e39ed0db0406
  • Commit Messages: Updated README with Makefile instruction
  • Pull Request: 2 PRs for the Makefile and separate scripts
  • Addressed By: Nelli Hovhannisyan, Joseph Lim

Feedback 5: Team email for "Code of Conduct"

  • The email under "enforcement" should be tied to the team.
  • URL: Commit
  • Commit: 9a8f64d96b890d6cae682713974c53ae2babf793
  • Commit Messages: Edited the code of conduct with our emails
  • Pull Request: PR #99
  • Addressed By: Nelli Hovhannisyan

Feedback 6: Add "maternal health risk" definition to README

  • URL: Commit
  • Commit: 991ee0c327c959f920e78299b2d29df1f3e0c520
  • Commit Messages: Added maternal risk definition to README
  • Pull Request: PR #102
  • Addressed By: Shannon Pflueger

Milestone 2 Feedbacks

Feedback 1: Validate missingness not beyond expected threshold

  • Configure Pandera to check for null values or ensure they are non-null.
  • URL: Commit
  • Commit: b425a0c806ba582d3087266bf466351c0ad4a7f1
  • Commit Messages: Added missingness threshold validation test
  • Pull Request: PR #98
  • Addressed By: Shannon Pflueger

Feedback 2: Update CONTRIBUTING.md

  • Include instructions on the naming system.
  • URL: Commit 1
  • Commit: a6d45f7
  • Commit Messages: Updated the CONTRIBUTING.md
  • Pull Request: PR #79
  • Addressed By: Nelli Hovhannisyan

Peer Reviews

Feedback 1: Add conclusions to the report

  • Include a subsection in the Discussion with conclusions.
  • URL: Commit
  • Commit: ab68bd2817aebab9bfb389e3638db7cd2fbcad7d
  • Commit Messages: Added conclusion to report and rendered to HTML and PDF
  • Pull Request: PR #102
  • Addressed By: Shannon Pflueger

Feedback 2: Update boxplot titles

  • URL: Commit
  • Commit: de4019e67054a0eccd3bc2a68a8d42f2ee49f6c1
  • Commit Messages: Updated the title of boxplots
  • Pull Request: PR #100
  • Addressed By: Nelli Hovhannisyan

Feedback 3: Fix in-text package citations

  • URL: Commit
  • Commit: a9d267aa7e8f491d54e862e71ebc5c1fe467ea86
  • Commit Messages: Fixed Python package in-text citations
  • Pull Request: PR #98
  • Addressed By: Shannon Pflueger