From 63495ce76d056e9977b2784ee0abca99de1ed9e8 Mon Sep 17 00:00:00 2001 From: Adam Byrne Date: Wed, 28 Feb 2024 15:06:25 +0000 Subject: [PATCH] env fixed --- environment.yml | 226 ----------------------------------------------- requirements.txt | 221 +++++++++++---------------------------------- 2 files changed, 54 insertions(+), 393 deletions(-) delete mode 100644 environment.yml diff --git a/environment.yml b/environment.yml deleted file mode 100644 index 582af70..0000000 --- a/environment.yml +++ /dev/null @@ -1,226 +0,0 @@ -name: ai-utils -channels: - - conda-forge - - defaults -dependencies: - - annotated-types=0.6.0=pyhd8ed1ab_0 - - anyio=3.7.1=pyhd8ed1ab_0 - - appnope=0.1.3=pyhd8ed1ab_0 - - arrow=1.3.0=pyhd8ed1ab_0 - - asttokens=2.4.1=pyhd8ed1ab_0 - - backcall=0.2.0=pyh9f0ad1d_0 - - backoff=2.2.1=pyhd8ed1ab_0 - - beautifulsoup4=4.12.2=pyha770c72_0 - - blessed=1.19.1=pyhe4f9e05_2 - - boto3=1.34.13=pyhd8ed1ab_0 - - botocore=1.34.13=pyhd8ed1ab_0 - - brotli-python=1.0.9=py38h4cd09af_9 - - ca-certificates=2023.11.17=h8857fd0_0 - - certifi=2023.11.17=pyhd8ed1ab_0 - - cffi=1.16.0=py38h082e395_0 - - charset-normalizer=3.3.2=pyhd8ed1ab_0 - - click=8.1.7=unix_pyh707e725_0 - - colorama=0.4.6=pyhd8ed1ab_0 - - comm=0.2.1=pyhd8ed1ab_0 - - croniter=1.4.1=pyhd8ed1ab_0 - - dateutils=0.6.12=py_0 - - debugpy=1.6.7=py38hcec6c5f_0 - - decorator=5.1.1=pyhd8ed1ab_0 - - deepdiff=6.7.1=pyhd8ed1ab_0 - - exceptiongroup=1.2.0=pyhd8ed1ab_0 - - executing=2.0.1=pyhd8ed1ab_0 - - fastapi=0.108.0=pyhd8ed1ab_0 - - fsspec=2023.12.2=pyhca7485f_0 - - h11=0.14.0=pyhd8ed1ab_0 - - idna=3.6=pyhd8ed1ab_0 - - importlib-metadata=7.0.1=pyha770c72_0 - - importlib_metadata=7.0.1=hd8ed1ab_0 - - inquirer=3.1.4=py38hecd8cb5_0 - - ipykernel=6.28.0=pyh3cd1d5f_0 - - ipython=8.12.0=pyhd1c38e8_0 - - itsdangerous=2.1.2=pyhd8ed1ab_0 - - jedi=0.19.1=pyhd8ed1ab_0 - - jinja2=3.1.2=pyhd8ed1ab_1 - - jmespath=1.0.1=pyhd8ed1ab_0 - - jupyter_client=8.6.0=pyhd8ed1ab_0 - - jupyter_core=5.7.0=py38h50d1736_0 - - libblas=3.9.0=20_osx64_openblas - - libcblas=3.9.0=20_osx64_openblas - - libcxx=14.0.6=h9765a3e_0 - - libffi=3.4.4=hecd8cb5_0 - - libgfortran=5.0.0=13_2_0_h97931a8_1 - - libgfortran5=13.2.0=h2873a65_1 - - liblapack=3.9.0=20_osx64_openblas - - libopenblas=0.3.25=openmp_hfef2a42_0 - - libprotobuf=3.20.3=hfff2838_0 - - libsodium=1.0.18=hbcb3906_1 - - lightning=2.1.3=pyhd8ed1ab_0 - - lightning-cloud=0.5.57=pyhd8ed1ab_0 - - lightning-utilities=0.10.0=pyhd8ed1ab_0 - - llvm-openmp=17.0.6=hb6ac08f_0 - - markdown-it-py=3.0.0=pyhd8ed1ab_0 - - markupsafe=2.1.3=py38hcafd530_1 - - matplotlib-inline=0.1.6=pyhd8ed1ab_0 - - mdurl=0.1.2=pyhd8ed1ab_0 - - mkl=2022.2.1=h44ed08c_16952 - - ncurses=6.4=hcec6c5f_0 - - nest-asyncio=1.5.8=pyhd8ed1ab_0 - - ninja=1.11.1=hb8565cd_0 - - openssl=3.2.0=hd75f5a5_1 - - ordered-set=4.1.0=pyhd8ed1ab_0 - - orjson=3.9.10=py38h7366990_0 - - packaging=23.2=pyhd8ed1ab_0 - - parso=0.8.3=pyhd8ed1ab_0 - - pexpect=4.8.0=pyh1a96a4e_2 - - pickleshare=0.7.5=py_1003 - - pip=23.3.1=py38hecd8cb5_0 - - platformdirs=4.1.0=pyhd8ed1ab_0 - - prompt-toolkit=3.0.42=pyha770c72_0 - - prompt_toolkit=3.0.42=hd8ed1ab_0 - - psutil=5.9.7=py38hae2e43d_0 - - ptyprocess=0.7.0=pyhd3deb0d_0 - - pure_eval=0.2.2=pyhd8ed1ab_0 - - pycparser=2.21=pyhd8ed1ab_0 - - pydantic=2.0.3=pyhd8ed1ab_1 - - pydantic-core=2.3.0=py38h7510fb3_0 - - pygments=2.17.2=pyhd8ed1ab_0 - - pyjwt=2.8.0=pyhd8ed1ab_0 - - pysocks=1.7.1=pyha2e5f31_6 - - python=3.8.18=h5ee71fb_0 - - python-dateutil=2.8.2=pyhd8ed1ab_0 - - python-editor=1.0.4=py_0 - - python-multipart=0.0.6=pyhd8ed1ab_0 - - python_abi=3.8=2_cp38 - - pytorch=1.12.1=cpu_py38h03065b0_0 - - pytorch-lightning=2.1.3=pyhd8ed1ab_0 - - pytz=2023.3.post1=pyhd8ed1ab_0 - - pyyaml=6.0.1=py38hcafd530_1 - - pyzmq=24.0.1=py38h0b711fd_0 - - readchar=4.0.5=pyhd8ed1ab_0 - - readline=8.2=hca72f7f_0 - - requests=2.31.0=pyhd8ed1ab_0 - - rich=13.7.0=pyhd8ed1ab_0 - - s3transfer=0.10.0=pyhd8ed1ab_0 - - setuptools=68.2.2=py38hecd8cb5_0 - - six=1.16.0=pyh6c4a22f_0 - - sleef=3.5.1=h6db0672_2 - - sniffio=1.3.0=pyhd8ed1ab_0 - - soupsieve=2.5=pyhd8ed1ab_1 - - sqlite=3.41.2=h6c40b1e_0 - - stack_data=0.6.2=pyhd8ed1ab_0 - - starlette=0.32.0.post1=pyhd8ed1ab_0 - - starsessions=1.3.0=pyhd8ed1ab_0 - - tbb=2021.8.0=ha357a0b_0 - - tk=8.6.12=h5d9f67b_0 - - torchmetrics=1.2.1=pyhd8ed1ab_0 - - tornado=6.3.3=py38hcafd530_1 - - tqdm=4.66.1=pyhd8ed1ab_0 - - traitlets=5.14.1=pyhd8ed1ab_0 - - types-python-dateutil=2.8.19.14=pyhd8ed1ab_0 - - uvicorn=0.25.0=py38h50d1736_0 - - wcwidth=0.2.12=pyhd8ed1ab_0 - - websocket-client=1.7.0=pyhd8ed1ab_0 - - websockets=12.0=py38hae2e43d_0 - - wheel=0.41.2=py38hecd8cb5_0 - - xz=5.4.5=h6c40b1e_0 - - yaml=0.2.5=h0d85af4_2 - - zeromq=4.3.4=h23ab428_0 - - zipp=3.17.0=pyhd8ed1ab_0 - - zlib=1.2.13=h4dc903c_0 - - pip: - - absl-py==2.0.0 - - aiohttp==3.9.1 - - aiosignal==1.3.1 - - altair==5.2.0 - - astunparse==1.6.3 - - async-timeout==4.0.3 - - attrs==23.2.0 - - cachetools==5.3.2 - - cloudpickle==3.0.0 - - colorlog==6.8.0 - - contourpy==1.1.1 - - cycler==0.12.1 - - dask==2023.5.0 - - dask-jobqueue==0.8.2 - - distributed==2023.5.0 - - dominate==2.9.1 - - filelock==3.13.1 - - flatbuffers==23.5.26 - - fonttools==4.47.0 - - frozenlist==1.4.1 - - gast==0.4.0 - - google-auth==2.26.1 - - google-auth-oauthlib==1.0.0 - - google-pasta==0.2.0 - - grpcio==1.60.0 - - h5py==3.10.0 - - imageio==2.33.1 - - importlib-resources==6.1.1 - - isort==5.13.2 - - joblib==1.3.2 - - jsonschema==4.21.0 - - jsonschema-specifications==2023.12.1 - - keras==2.13.1 - - kiwisolver==1.4.5 - - lazy-loader==0.3 - - libclang==16.0.6 - - locket==1.0.0 - - markdown==3.5.1 - - matplotlib==3.7.4 - - mpmath==1.3.0 - - msgpack==1.0.7 - - multidict==6.0.4 - - networkx==3.1 - - numpy==1.24.4 - - oauthlib==3.2.2 - - opencv-python==4.9.0.80 - - opt-einsum==3.3.0 - - pandas==2.0.3 - - partd==1.4.1 - - patsy==0.5.6 - - pillow==10.2.0 - - pkgutil-resolve-name==1.3.10 - - plantcv==4.0.1 - - protobuf==4.25.1 - - py-cpuinfo==9.0.0 - - pyasn1==0.5.1 - - pyasn1-modules==0.3.0 - - pydot==2.0.0 - - pyparsing==3.1.1 - - python-graphviz==0.20.1 - - pywavelets==1.4.1 - - referencing==0.32.1 - - requests-oauthlib==1.3.1 - - rpds-py==0.17.1 - - rsa==4.9 - - scikit-image==0.21.0 - - scikit-learn==1.3.2 - - scipy==1.10.1 - - seaborn==0.13.1 - - sortedcontainers==2.4.0 - - statsmodels==0.14.1 - - sympy==1.12 - - tblib==3.0.0 - - tensorboard==2.13.0 - - tensorboard-data-server==0.7.2 - - tensorflow==2.13.1 - - tensorflow-estimator==2.13.0 - - tensorflow-io-gcs-filesystem==0.34.0 - - termcolor==2.4.0 - - thop==0.1.1-2209072238 - - threadpoolctl==3.2.0 - - tifffile==2023.7.10 - - toolz==0.12.0 - - torch==2.1.2 - - torchvision==0.16.2 - - typing-extensions==4.5.0 - - tzdata==2023.4 - - ultralytics==8.0.235 - - urllib3==2.1.0 - - vl-convert-python==1.2.0 - - werkzeug==3.0.1 - - wrapt==1.16.0 - - xarray==2023.1.0 - - yarl==1.9.4 - - zict==3.0.0 -prefix: /Users/adambyrne/anaconda3/envs/ai-utils diff --git a/requirements.txt b/requirements.txt index bdd8d6f..4cddb6e 100644 --- a/requirements.txt +++ b/requirements.txt @@ -1,188 +1,75 @@ -absl-py==2.0.0 -aiohttp==3.9.1 -aiosignal==1.3.1 -altair==5.2.0 -annotated-types @ file:///home/conda/feedstock_root/build_artifacts/annotated-types_1696634205638/work -anyio @ file:///home/conda/feedstock_root/build_artifacts/anyio_1688651106312/work/dist -appnope @ file:///home/conda/feedstock_root/build_artifacts/appnope_1649077682618/work -arrow @ file:///home/conda/feedstock_root/build_artifacts/arrow_1696128962909/work -asttokens @ file:///home/conda/feedstock_root/build_artifacts/asttokens_1698341106958/work +absl-py==2.1.0 +appnope==0.1.3 +asttokens==2.4.1 astunparse==1.6.3 -async-timeout==4.0.3 -attrs==23.2.0 -backcall @ file:///home/conda/feedstock_root/build_artifacts/backcall_1592338393461/work -backoff @ file:///home/conda/feedstock_root/build_artifacts/backoff_1665004764738/work -beautifulsoup4 @ file:///home/conda/feedstock_root/build_artifacts/beautifulsoup4_1680888073205/work -blessed @ file:///home/conda/feedstock_root/build_artifacts/blessed_1666523113356/work -boto3 @ file:///home/conda/feedstock_root/build_artifacts/boto3_1704419679557/work -botocore @ file:///home/conda/feedstock_root/build_artifacts/botocore_1704411238215/work -Brotli @ file:///Users/runner/miniforge3/conda-bld/brotli-split_1687884187023/work cachetools==5.3.2 -certifi @ file:///home/conda/feedstock_root/build_artifacts/certifi_1700303426725/work/certifi -cffi @ file:///Users/runner/miniforge3/conda-bld/cffi_1696001783851/work -charset-normalizer @ file:///home/conda/feedstock_root/build_artifacts/charset-normalizer_1698833585322/work -click @ file:///home/conda/feedstock_root/build_artifacts/click_1692311806742/work -cloudpickle==3.0.0 -colorama @ file:///home/conda/feedstock_root/build_artifacts/colorama_1666700638685/work -colorlog==6.8.0 -comm @ file:///home/conda/feedstock_root/build_artifacts/comm_1704278392174/work -contourpy==1.1.1 -croniter @ file:///home/conda/feedstock_root/build_artifacts/croniter_1686929181238/work +certifi==2023.11.17 +charset-normalizer==3.3.2 +colorlog==6.8.2 +comm==0.2.1 +contourpy==1.2.0 cycler==0.12.1 -dask==2023.5.0 -dask-jobqueue==0.8.2 -dateutils @ file:///home/conda/feedstock_root/build_artifacts/dateutils_1603450192521/work -debugpy @ file:///private/var/folders/sy/f16zz6x50xz3113nwtb9bvq00000gp/T/abs_30hp2nowkm/croot/debugpy_1690905056188/work -decorator @ file:///home/conda/feedstock_root/build_artifacts/decorator_1641555617451/work -deepdiff @ file:///home/conda/feedstock_root/build_artifacts/deepdiff_1699970200924/work -distributed==2023.5.0 -dm-tree==0.1.8 -dominate==2.9.1 -exceptiongroup @ file:///home/conda/feedstock_root/build_artifacts/exceptiongroup_1700579780973/work -executing @ file:///home/conda/feedstock_root/build_artifacts/executing_1698579936712/work -fastapi @ file:///home/conda/feedstock_root/build_artifacts/fastapi_1703630842611/work -filelock==3.13.1 +debugpy==1.8.0 +decorator==5.1.1 +executing==2.0.1 flatbuffers==23.5.26 -fonttools==4.47.0 -frozenlist==1.4.1 -fsspec @ file:///home/conda/feedstock_root/build_artifacts/fsspec_1702335961905/work -gast==0.4.0 -google-auth==2.26.1 -google-auth-oauthlib==1.0.0 +fonttools==4.47.2 +gast==0.5.4 +google-auth==2.27.0 +google-auth-oauthlib==1.2.0 google-pasta==0.2.0 -graphviz==0.20.1 grpcio==1.60.0 -h11 @ file:///home/conda/feedstock_root/build_artifacts/h11_1664132893548/work h5py==3.10.0 -idna @ file:///home/conda/feedstock_root/build_artifacts/idna_1701026962277/work -imageio==2.33.1 -importlib-metadata @ file:///home/conda/feedstock_root/build_artifacts/importlib-metadata_1703269254275/work -importlib-resources==6.1.1 -inquirer @ file:///private/var/folders/sy/f16zz6x50xz3113nwtb9bvq00000gp/T/abs_fa7c_dwu3h/croot/inquirer_1702293668801/work -ipykernel @ file:///Users/runner/miniforge3/conda-bld/ipykernel_1703631823913/work -ipython @ file:///Users/runner/miniforge3/conda-bld/ipython_1680185563420/work -isort==5.13.2 -itsdangerous @ file:///home/conda/feedstock_root/build_artifacts/itsdangerous_1648147185463/work -jedi @ file:///home/conda/feedstock_root/build_artifacts/jedi_1696326070614/work -Jinja2 @ file:///home/conda/feedstock_root/build_artifacts/jinja2_1654302431367/work -jmespath @ file:///home/conda/feedstock_root/build_artifacts/jmespath_1655568249366/work -joblib==1.3.2 -jsonschema==4.21.0 -jsonschema-specifications==2023.12.1 -jupyter_client @ file:///home/conda/feedstock_root/build_artifacts/jupyter_client_1699283905679/work -jupyter_core @ file:///Users/runner/miniforge3/conda-bld/jupyter_core_1704321428028/work -keras==2.13.1 +idna==3.6 +ipykernel==6.29.0 +ipython==8.20.0 +jedi==0.19.1 +jupyter_client==8.6.0 +jupyter_core==5.7.1 +keras==2.15.0 kiwisolver==1.4.5 -lazy_loader==0.3 libclang==16.0.6 -lightning @ file:///home/conda/feedstock_root/build_artifacts/lightning_1703183427368/work -lightning-cloud @ file:///home/conda/feedstock_root/build_artifacts/lightning-cloud_1701460951651/work -lightning-utilities @ file:///home/conda/feedstock_root/build_artifacts/lightning-utilities_1700426561521/work -locket==1.0.0 -Markdown==3.5.1 -markdown-it-py @ file:///home/conda/feedstock_root/build_artifacts/markdown-it-py_1686175045316/work -MarkupSafe @ file:///Users/runner/miniforge3/conda-bld/markupsafe_1695367606033/work -matplotlib==3.7.4 -matplotlib-inline @ file:///home/conda/feedstock_root/build_artifacts/matplotlib-inline_1660814786464/work -mdurl @ file:///home/conda/feedstock_root/build_artifacts/mdurl_1704317613764/work -mpmath==1.3.0 -msgpack==1.0.7 -multidict==6.0.4 -nest-asyncio @ file:///home/conda/feedstock_root/build_artifacts/nest-asyncio_1697083700168/work -networkx==3.1 -numpy @ file:///Users/runner/miniforge3/conda-bld/numpy_1668919164289/work +Markdown==3.5.2 +MarkupSafe==2.1.4 +matplotlib==3.8.2 +matplotlib-inline==0.1.6 +ml-dtypes==0.2.0 +nest-asyncio==1.6.0 +numpy==1.26.3 oauthlib==3.2.2 opencv-python==4.9.0.80 opt-einsum==3.3.0 -ordered-set @ file:///home/conda/feedstock_root/build_artifacts/ordered-set_1643221357603/work -orjson @ file:///Users/runner/miniforge3/conda-bld/orjson_1698619133148/work/target/wheels/orjson-3.9.10-cp38-cp38-macosx_10_9_x86_64.whl#sha256=b0e9d0a8409ff9af2de5acb70fc2477ef5829b3cd95e118eac59399f66ce2c0b -packaging @ file:///home/conda/feedstock_root/build_artifacts/packaging_1696202382185/work -pandas==2.0.3 -parso @ file:///home/conda/feedstock_root/build_artifacts/parso_1638334955874/work -partd==1.4.1 -patsy==0.5.6 -pexpect @ file:///home/conda/feedstock_root/build_artifacts/pexpect_1667297516076/work -pickleshare @ file:///home/conda/feedstock_root/build_artifacts/pickleshare_1602536217715/work +packaging==23.2 +parso==0.8.3 +pexpect==4.9.0 pillow==10.2.0 -pkgutil_resolve_name==1.3.10 -plantcv==4.0.1 -platformdirs @ file:///home/conda/feedstock_root/build_artifacts/platformdirs_1701708255999/work -prompt-toolkit @ file:///home/conda/feedstock_root/build_artifacts/prompt-toolkit_1702399386289/work -protobuf==4.25.1 -psutil @ file:///Users/runner/miniforge3/conda-bld/psutil_1702833174772/work -ptyprocess @ file:///home/conda/feedstock_root/build_artifacts/ptyprocess_1609419310487/work/dist/ptyprocess-0.7.0-py2.py3-none-any.whl -pure-eval @ file:///home/conda/feedstock_root/build_artifacts/pure_eval_1642875951954/work -py-cpuinfo==9.0.0 +platformdirs==4.1.0 +prompt-toolkit==3.0.43 +protobuf==4.23.4 +psutil==5.9.8 +ptyprocess==0.7.0 +pure-eval==0.2.2 pyasn1==0.5.1 pyasn1-modules==0.3.0 -pycparser @ file:///home/conda/feedstock_root/build_artifacts/pycparser_1636257122734/work -pydantic @ file:///home/conda/feedstock_root/build_artifacts/pydantic_1689770207113/work -pydantic_core @ file:///Users/runner/miniforge3/conda-bld/pydantic-core_1689286481431/work -pydot==2.0.0 -Pygments @ file:///home/conda/feedstock_root/build_artifacts/pygments_1700607939962/work -PyJWT @ file:///home/conda/feedstock_root/build_artifacts/pyjwt_1689721553971/work +Pygments==2.17.2 pyparsing==3.1.1 -PySocks @ file:///home/conda/feedstock_root/build_artifacts/pysocks_1661604839144/work -python-dateutil @ file:///home/conda/feedstock_root/build_artifacts/python-dateutil_1626286286081/work -python-editor==1.0.4 -python-multipart @ file:///home/conda/feedstock_root/build_artifacts/python-multipart_1679167423335/work -pytorch-lightning @ file:///home/conda/feedstock_root/build_artifacts/pytorch-lightning_1703184181175/work -pytz @ file:///home/conda/feedstock_root/build_artifacts/pytz_1693930252784/work -PyWavelets==1.4.1 -PyYAML @ file:///Users/runner/miniforge3/conda-bld/pyyaml_1695373482546/work -pyzmq @ file:///Users/runner/miniforge3/conda-bld/pyzmq_1663830595432/work -readchar @ file:///home/conda/feedstock_root/build_artifacts/readchar_1679045163536/work -referencing==0.32.1 -requests @ file:///home/conda/feedstock_root/build_artifacts/requests_1684774241324/work +python-dateutil==2.8.2 +pyzmq==25.1.2 +requests==2.31.0 requests-oauthlib==1.3.1 -rich @ file:///home/conda/feedstock_root/build_artifacts/rich-split_1700160075651/work/dist -rpds-py==0.17.1 rsa==4.9 -s3transfer @ file:///home/conda/feedstock_root/build_artifacts/s3transfer_1703197439685/work -scikit-image==0.21.0 -scikit-learn==1.3.2 -scipy==1.10.1 -seaborn==0.13.1 -six @ file:///home/conda/feedstock_root/build_artifacts/six_1620240208055/work -sniffio @ file:///home/conda/feedstock_root/build_artifacts/sniffio_1662051266223/work -sortedcontainers==2.4.0 -soupsieve @ file:///home/conda/feedstock_root/build_artifacts/soupsieve_1693929250441/work -stack-data @ file:///home/conda/feedstock_root/build_artifacts/stack_data_1669632077133/work -starlette @ file:///home/conda/feedstock_root/build_artifacts/starlette-recipe_1699470423274/work -starsessions @ 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