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marypiper

Update 09_merged_SC_marker_identification.md

May 20, 2020

8c74982 · May 20, 2020

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Name		Name	Last commit message	Last commit date
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.DS_Store		.DS_Store	Adding figures to sc DE lesson	May 20, 2020
01_intro_to_scRNA-seq.md		01_intro_to_scRNA-seq.md	Update 01_intro_to_scRNA-seq.md	Feb 27, 2020
02_SC_generation_of_count_matrix.md		02_SC_generation_of_count_matrix.md	Update 02_SC_generation_of_count_matrix.md	Feb 27, 2020
03_SC_quality_control-setup.md		03_SC_quality_control-setup.md	Remove Matrix.utils library loading	Feb 21, 2020
04_SC_quality_control.md		04_SC_quality_control.md	Update 04_SC_quality_control.md	Feb 24, 2020
05_normalization_and_PCA.md		05_normalization_and_PCA.md	Update 05_normalization_and_PCA.md	Dec 2, 2019
06_SC_SCT_and_integration.md		06_SC_SCT_and_integration.md	Update 06_SC_SCT_and_integration.md	Feb 28, 2020
07_SC_clustering_cells_SCT.md		07_SC_clustering_cells_SCT.md	Update 07_SC_clustering_cells_SCT.md	Feb 28, 2020
08_SC_clustering_quality_control.md		08_SC_clustering_quality_control.md	Update 08_SC_clustering_quality_control.md	Feb 25, 2020
09_merged_SC_marker_identification.md		09_merged_SC_marker_identification.md	Update 09_merged_SC_marker_identification.md	May 20, 2020
OLD_SC_clustering_analysis_integration.md		OLD_SC_clustering_analysis_integration.md	Rename 08_SC_clustering_analysis_integration.md to OLD_SC_clustering_…	Nov 26, 2019
OLD_SC_clustering_cells.md		OLD_SC_clustering_cells.md	Rename 05_SC_clustering_cells.md to OLD_SC_clustering_cells.md	Nov 26, 2019
OLD_SC_marker_identification.md		OLD_SC_marker_identification.md	Rename 07_SC_marker_identification.md to OLD_SC_marker_identification.md	Nov 26, 2019
OLD_SC_marker_identification_integration.md		OLD_SC_marker_identification_integration.md	Rename 09_SC_marker_identification_integration.md to OLD_SC_marker_id…	Nov 26, 2019
OLD_SC_pre-QC.md		OLD_SC_pre-QC.md	Rename 01_SC_pre-QC.md to OLD_SC_pre-QC.md	Nov 26, 2019
QC_bad_data.md		QC_bad_data.md	Update QC_bad_data.md	Feb 24, 2020
cell_cycle_scoring.md		cell_cycle_scoring.md	updates to clustering/integration markdown	Nov 18, 2019
clusterQC_exercise.md		clusterQC_exercise.md	Rename clusterQC_exercise to clusterQC_exercise.md	Dec 3, 2019
elbow_plot_metric.md		elbow_plot_metric.md	Update elbow_plot_metric.md	Nov 25, 2019
fetching_annotations.md		fetching_annotations.md	Create fetching_annotations.md	Dec 3, 2019
mitoRatio.md		mitoRatio.md	Update mitoRatio.md	Jun 12, 2019
old-clustering_analysis_all_clustering_and_qc.md		old-clustering_analysis_all_clustering_and_qc.md	uupdated 04 lesson to be old-	Jul 11, 2019
old-clustering_analysis_integration.md		old-clustering_analysis_integration.md	Renaming lessons not using as old-	Jul 11, 2019
old-quality_control_analysis_sce.md		old-quality_control_analysis_sce.md	Renaming lessons not using as old-	Jul 11, 2019
old-quality_control_first_draft.md		old-quality_control_first_draft.md	Renaming lessons not using as old-	Jul 11, 2019
old-single_cell_rnaseq_MS.Rmd		old-single_cell_rnaseq_MS.Rmd	Rename single_cell_rnaseq_MS.Rmd to old-single_cell_rnaseq_MS.Rmd	Jul 9, 2019
pseudobulk_DESeq2_scrnaseq.md		pseudobulk_DESeq2_scrnaseq.md	added Dropbox link to input dataset	May 20, 2020
readMM_loadData.md		readMM_loadData.md	Update readMM_loadData.md	Jan 30, 2020
sc_exercises_clustering_analysis.md		sc_exercises_clustering_analysis.md	Update sc_exercises_clustering_analysis.md	Jul 18, 2019
sc_exercises_integ_clustering_analysis.md		sc_exercises_integ_clustering_analysis.md	Created exercises within the integ clustering	Jul 10, 2019
sc_exercises_integ_marker_identification.md		sc_exercises_integ_marker_identification.md	finishing integ marker ident and answer key	Jul 11, 2019
sc_exercises_marker_analysis.md		sc_exercises_marker_analysis.md	Update sc_exercises_marker_analysis.md	Jul 18, 2019
sc_exercises_qc_analysis.md		sc_exercises_qc_analysis.md	Updating figures	Jan 30, 2020
umap-installation.md		umap-installation.md	Update umap-installation.md	Jul 25, 2019
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