DESCRIPTION

Package: ImpulseDE
Type: Package
Title: Detection of DE genes in time series data using impulse models
Version: 0.99.0
Date: 2016-06-16
Author: Jil Sander [aut, cre],
    Nir Yosef [aut]
Maintainer: Jil Sander <jil.sander@uni-bonn.de>,
    Nir Yosef <niryosef@berkeley.edu>
biocViews: Software,
    StatisticalMethod,
    TimeCourse
Depends: graphics,
    grDevices,
    stats,
    utils,
    parallel,
    compiler,
    R (>= 3.3)
Imports:
    amap,
    boot
Suggests: longitudinal,
    knitr
Description: ImpulseDE is suited to capture single impulse-like patterns in
    high throughput time series datasets. By fitting a representative
    impulse model to each gene, it reports differentially expressed genes
    whether across time points in a single experiment or between two time
    courses from two experiments. To optimize the running time, the code
    makes use of clustering steps and multi-threading.
License: GPL-3
LazyData: TRUE
RoxygenNote: 5.0.0
VignetteBuilder: knitr
URL: https://github.com/YosefLab/ImpulseDE
BugReports: https://github.com/YosefLab/ImpulseDE/issues