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I'm unable to use 'upsetplot' (either as part of DOSE or clusterProfiler) - why am I receiving this error? DOSE was installed via:
BiocManager::install("DOSE")
[](> library(DOSE) DOSE v3.12.0 For help: https://guangchuangyu.github.io/software/DOSE If you use DOSE in published research, please cite: Guangchuang Yu, Li-Gen Wang, Guang-Rong Yan, Qing-Yu He. DOSE: an R/Bioconductor package for Disease Ontology Semantic and Enrichment analysis. Bioinformatics 2015, 31(4):608-609 > upsetplot Error: object 'upsetplot' not found > sessionInfo() R version 3.6.1 (2019-07-05) Platform: x86_64-pc-linux-gnu (64-bit) Running under: Ubuntu 19.10 Matrix products: default BLAS: /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.8.0 LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.8.0 locale: [1] LC_CTYPE=en_IL.UTF-8 LC_NUMERIC=C LC_TIME=en_IL.UTF-8 LC_COLLATE=en_IL.UTF-8 LC_MONETARY=en_IL.UTF-8 [6] LC_MESSAGES=en_IL.UTF-8 LC_PAPER=en_IL.UTF-8 LC_NAME=C LC_ADDRESS=C LC_TELEPHONE=C [11] LC_MEASUREMENT=en_IL.UTF-8 LC_IDENTIFICATION=C attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] DOSE_3.12.0 loaded via a namespace (and not attached): [1] Biobase_2.46.0 viridis_0.5.1 httr_1.4.1 tidyr_1.0.2 tidygraph_1.1.2 bit64_0.9-7 [7] jsonlite_1.6.1 viridisLite_0.3.0 splines_3.6.1 ggraph_2.0.1 assertthat_0.2.1 DO.db_2.9 [13] BiocManager_1.30.10 rvcheck_0.1.7 triebeard_0.3.0 urltools_1.7.3 stats4_3.6.1 blob_1.2.1 [19] progress_1.2.2 ggrepel_0.8.1 pillar_1.4.3 RSQLite_2.2.0 lattice_0.20-38 glue_1.3.1 [25] digest_0.6.23 RColorBrewer_1.1-2 polyclip_1.10-0 qvalue_2.18.0 colorspace_1.4-1 cowplot_1.0.0 [31] Matrix_1.2-17 plyr_1.8.5 pkgconfig_2.0.3 clusterProfiler_3.14.3 purrr_0.3.3 GO.db_3.10.0 [37] scales_1.1.0 ggplotify_0.0.4 europepmc_0.3 tweenr_1.0.1 enrichplot_1.6.1 BiocParallel_1.20.1 [43] ggforce_0.3.1 tibble_2.1.3 farver_2.0.3 IRanges_2.20.2 ggplot2_3.2.1 BiocGenerics_0.32.0 [49] lazyeval_0.2.2 magrittr_1.5 crayon_1.3.4 memoise_1.1.0 MASS_7.3-51.4 xml2_1.2.2 [55] tools_3.6.1 data.table_1.12.8 prettyunits_1.1.1 hms_0.5.3 lifecycle_0.1.0 stringr_1.4.0 [61] S4Vectors_0.24.3 munsell_0.5.0 AnnotationDbi_1.48.0 compiler_3.6.1 gridGraphics_0.4-1 rlang_0.4.4 [67] ggridges_0.5.2 grid_3.6.1 rstudioapi_0.10 igraph_1.2.4.2 gtable_0.3.0 DBI_1.1.0 [73] reshape2_1.4.3 graphlayouts_0.5.0 R6_2.4.1 gridExtra_2.3 dplyr_0.8.4 bit_1.1-15.1 [79] fastmatch_1.1-0 fgsea_1.12.0 GOSemSim_2.12.0 stringi_1.4.5 parallel_3.6.1 Rcpp_1.0.3 [85] vctrs_0.2.2 tidyselect_1.0.0 )
The text was updated successfully, but these errors were encountered:
upsetplot is a function in package enrichplot.
upsetplot
enrichplot
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I'm unable to use 'upsetplot' (either as part of DOSE or clusterProfiler) - why am I receiving this error? DOSE was installed via:
BiocManager::install("DOSE")
The text was updated successfully, but these errors were encountered: