README.Rmd

---
output:
  md_document:
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```{r echo=FALSE, results="hide", message=FALSE}
library("badger")
library("ypages")
```

# ReactomePA: Reactome Pathway Analysis

[![Project Status: Active - The project has reached a stable, usable state and is being actively developed.](http://www.repostatus.org/badges/latest/active.svg)](http://www.repostatus.org/#active)
[![codecov](https://codecov.io/gh/GuangchuangYu/ReactomePA/branch/master/graph/badge.svg)](https://codecov.io/gh/GuangchuangYu/ReactomePA/)
`r badge_bioc_release("ReactomePA", "green")`
`r badge_devel("guangchuangyu/ReactomePA", "green")`
[![Bioc](http://www.bioconductor.org/shields/years-in-bioc/clusterProfiler.svg)](https://www.bioconductor.org/packages/devel/bioc/html/clusterProfiler.html#since)


[![platform](http://www.bioconductor.org/shields/availability/devel/ReactomePA.svg)](https://www.bioconductor.org/packages/devel/bioc/html/ReactomePA.html#archives)
[![Last-changedate](https://img.shields.io/badge/last%20change-`r gsub('-', '--', Sys.Date())`-green.svg)](https://github.com/GuangchuangYu/ReactomePA/commits/master)
[![Build Status](http://www.bioconductor.org/shields/build/devel/bioc/ReactomePA.svg)](https://bioconductor.org/checkResults/devel/bioc-LATEST/ReactomePA/)
[![Linux/Mac Travis Build Status](https://img.shields.io/travis/GuangchuangYu/ReactomePA/master.svg?label=Mac%20OSX%20%26%20Linux)](https://travis-ci.org/GuangchuangYu/ReactomePA)
[![AppVeyor Build Status](https://img.shields.io/appveyor/ci/Guangchuangyu/ReactomePA/master.svg?label=Windows)](https://ci.appveyor.com/project/GuangchuangYu/ReactomePA)




```{r comment="", echo=FALSE, results='asis'}
cat(packageDescription('ReactomePA')$Description)
```


For details, please visit <https://yulab-smu.top/biomedical-knowledge-mining-book/>.


## :writing_hand: Authors

Guangchuang YU

School of Basic Medical Sciences, Southern Medical University

<https://yulab-smu.top>


[![Twitter](https://img.shields.io/twitter/url/http/shields.io.svg?style=social&logo=twitter)](https://twitter.com/intent/tweet?hashtags=ReactomePA&url=http://pubs.rsc.org/en/Content/ArticleLanding/2016/MB/C5MB00663E#!divAbstract)
[![saythanks](https://img.shields.io/badge/say-thanks-ff69b4.svg)](https://saythanks.io/to/GuangchuangYu)
`r badger::badge_custom('follow me on', 'WeChat', 'green', 'https://guangchuangyu.github.io/blog_images/biobabble.jpg')`



------------------------------------------------------------------------

Please cite the following article when using `ReactomePA`:

__*G Yu*__, QY He^\*^. ReactomePA: an R/Bioconductor package for reactome pathway analysis and visualization. __*Molecular BioSystems*__ 2016, 12(2):477-479.


`r badge_doi("10.1039/c5mb00663e", "green")`

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r badge_bioc_download("ReactomePA", "total", "blue")
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