0.8.15

• pySCENIC requires python 3.6 because of loompy (http://linnarssonlab.org/loompy/installation/index.html)
• Updated support for loom file export (SCope).

0.8.14

BugFix: TypeError when invoking pyscenic from the command line.

0.8.13

BugFix: Signature of Loompy.create() changed which resulted in an error when invoking export2loom.

0.8.12

Avoid degradation of performance by better thread allocation (i.e. better cooperation between dask framework and numpy - via MKL extensions or OpenBLAS).

0.8.11

Clean up of package dependencies.

0.8.10

Fixed installation issue.

0.8.9

BugFix in command line interface: change functionality of all_modules option.

0.8.8

• Overall more consistent CLI.
• Possibility for the user to keep negative regulons in the analysis via the CLI.

0.8.7

• support for dask 0.18+
• modules_from_adjacencies: by default keep only modules in which the expression of the TFs is positively correlated with its target genes.
• Command Line Interface: support for JSON-serialized regulon output in cisTarget/prune step.

0.8.6

Loom export functionality (for SCope): sequence logo is now part of a regulon's metadata.