From 317e34b72cd284709451f34abf00bfe595b5d122 Mon Sep 17 00:00:00 2001
From: koneill <oneillkza@gmail.com>
Date: Thu, 5 Sep 2024 12:49:07 -0700
Subject: [PATCH] lint yaml again

---
 .github/workflows/renderNotebooks.yaml | 33 ++++++++++++--------------
 1 file changed, 15 insertions(+), 18 deletions(-)

diff --git a/.github/workflows/renderNotebooks.yaml b/.github/workflows/renderNotebooks.yaml
index 6675961..0a28037 100644
--- a/.github/workflows/renderNotebooks.yaml
+++ b/.github/workflows/renderNotebooks.yaml
@@ -48,21 +48,21 @@ jobs:
           labels: ${{ steps.meta_rmd.outputs.labels }}
 
       - name: Run Docker container to compile changed R Markdown files
-      uses: addnab/docker-run-action@v3
-      with:
-        image: ${{ steps.meta_rmd.outputs.tags }}
-        options: -v ${{ github.workspace }}:/workspace --rm -u root
-      run: |
-        CHANGED_RMD_FILES=$(git diff --name-only HEAD^ HEAD -- '*.Rmd' '*.rmd')
-        if [ -n "$CHANGED_RMD_FILES" ]; then
-          echo "Changed R Markdown files:"
-          echo "$CHANGED_RMD_FILES"
-          for RMD in $CHANGED_RMD_FILES; do
-            Rscript -e 'for (f in commandArgs(TRUE)) if (file.exists(f)) rmarkdown::render(f, output_format = "all")' /workspace/$RMD
-          done
-        else
-          echo "No changed R Markdown files found. Skipping execution."
-        fi
+        uses: addnab/docker-run-action@v3
+        with:
+          image: ${{ steps.meta_rmd.outputs.tags }}
+          options: -v ${{ github.workspace }}:/workspace --rm -u root
+        run: |
+          CHANGED_RMD_FILES=$(git diff --name-only HEAD^ HEAD -- '*.Rmd' '*.rmd')
+          if [ -n "$CHANGED_RMD_FILES" ]; then
+            echo "Changed R Markdown files:"
+            echo "$CHANGED_RMD_FILES"
+            for RMD in $CHANGED_RMD_FILES; do
+              Rscript -e 'for (f in commandArgs(TRUE)) if (file.exists(f)) rmarkdown::render(f, output_format = "all")' /workspace/$RMD
+            done
+          else
+            echo "No changed R Markdown files found. Skipping execution."
+          fi
 
 
       - name: Run Docker container to compile assets
@@ -80,9 +80,6 @@ jobs:
                 done
             else
                 echo "No R markdown found. Skipping execution."
-            fi
-      #Checkout again to avoid race condition with parallel-running Jupyter rendering script.
-      - uses: actions/checkout@v4
       - uses: stefanzweifel/git-auto-commit-action@v5