diff --git a/README.md b/README.md index 6a81f17..b338c00 100755 --- a/README.md +++ b/README.md @@ -13,7 +13,7 @@ Implementation: Cecilia Yang # Setup 1. Download mtGrasp package - You can download the latest version of the tarball file [here](https://github.com/bcgsc/mtGrasp/releases/download/v1.1.0/mtGrasp-v1.1.0.tar.gz). + You can download the latest version of the tarball file [here](https://github.com/bcgsc/mtGrasp/releases/download/v1.1.3/mtGrasp-v1.1.3.tar.gz). 2. Add the mtGrasp directory to your PATH, use the following command to check if it is added correctly diff --git a/mtgrasp.py b/mtgrasp.py index e5cd126..15f1036 100755 --- a/mtgrasp.py +++ b/mtgrasp.py @@ -8,7 +8,7 @@ import shlex import sys -MTGRASP_VERSION = 'mtGrasp v1.1.2' # Make sure to edit the version for future releases +MTGRASP_VERSION = 'mtGrasp v1.1.3' parser = argparse.ArgumentParser(description='mtGrasp: de novo assembly of reference-grade animal mitochondrial genomes') parser.add_argument('-r1', '--read1', help='Forward read fastq.gz file [Required]') diff --git a/mtgrasp.smk b/mtgrasp.smk index fc113c5..2314dfe 100755 --- a/mtgrasp.smk +++ b/mtgrasp.smk @@ -1,6 +1,5 @@ # Snakemake file for mtGrasp pipeline -# Make sure to edit the version for new releases -mtgrasp_version = 'v1.1.2' +mtgrasp_version = 'v1.1.3' import os.path diff --git a/mtgrasp_standardize.py b/mtgrasp_standardize.py index b00412c..b846bda 100755 --- a/mtgrasp_standardize.py +++ b/mtgrasp_standardize.py @@ -1,6 +1,5 @@ #!/usr/bin/env python3 -# Make sure to edit the version for new releases -mtgrasp_version = 'v1.1.2' +mtgrasp_version = 'v1.1.3' import argparse import sys diff --git a/mtgrasp_summarize.py b/mtgrasp_summarize.py index 7222754..51cfc3b 100755 --- a/mtgrasp_summarize.py +++ b/mtgrasp_summarize.py @@ -3,7 +3,7 @@ ''' This script can be used to summarize mtGrasp assembly outputs by providing a text file containing the relative or complete path(s) to assembly output folder(s). ''' -mtgrasp_version = 'v1.1.2' # Make sure to edit the version for future releases +mtgrasp_version = 'v1.1.3' import argparse import os @@ -117,7 +117,7 @@ def get_assembly_metrics(fasta): "Standardization Status": standardization_status_list }) -df.to_csv(tsv_filename, sep="\t") +df.to_csv(tsv_filename, sep="\t", index=False) with open(path_txt_filename, 'w') as f: for path in file_list: