Problem with VCF files

[stfacc]

When I try to process the resulting VCF file with bcftools, (for instance a simple bcftools view) I get this kind of errors:

It looks like there's an invalid header line:

##INFO=<ID=CIRB,Number=.Integer,Type=Confidence interval around RB>

Also, if I understand correctly the VCF specs, the SVLEN field be something like SVLEN=22,22 (with= instead of :)

Thanks

[MemoonaRasheed]

I am facing similar issue. I tried to concat the vcf files using bcftools and got this message

[W::bcf_hdr_register_hrec] The type "Confidence interval around RB" is not supported, assuming "String"
[W::bcf_hdr_register_hrec] The type "Confidence interval around RB" is not supported, assuming "String"
[W::bcf_hdr_register_hrec] The type "Confidence interval around RB" is not supported, assuming "String"
[W::bcf_hdr_register_hrec] The type "Confidence interval around RB" is not supported, assuming "String"
[W::bcf_hdr_register_hrec] The type "Confidence interval around RB" is not supported, assuming "String"
[W::bcf_hdr_register_hrec] The type "Confidence interval around RB" is not supported, assuming "String"

[readmanchiu]

Thank you both for reporting the errors and my apologies for overlooking them.
I just released v1.5.3 that should fix them. It may a bit longer for bioconda to update.