layout	permalink	title	header1	header2	image	keywords	description	instructors	length
workshop_main_6day	/bicg_2018	Bioinformatics for Cancer Genomics	Workshop Pages for Students	Bioinformatics for Cancer Genomics	/site_images/CBW_cancerDNA_icon-16.jpg	Visualize genomic data, pathway analysis, integrate clinical data	Course covers the key bioinformatics concepts and tools required to analyze cancer genomic data sets and access and work with data sets in the cloud.	Jared Simpson, Trevor Pugh, Francis Ouellette, Andrew McPherson, Sorana Morrissy, Juri Reimand, Lincoln Stein, Robin Haw, Anna Goldenberg, Fouad Yousif, Mark Phillips, Brian O'Connor, Christina Yung, George Mihaiescu, Zhibin Lu	6 days

Welcome

Welcome to Bioinformatics for Cancer Genomics.

The course schedule can be found here.

Pre-readings, pre-work, and laptop setup instructions can be found here here.

If you have questions or comments, visit the workshop Q&A forum. You may need to join the group by clicking on the "+" symbol and entering the class code.

You can download the printed course manual here.

Class Photo

Day 1

Welcome

Ann Meyer

Module 1: Introduction to Cancer Genomics

Trevor Pugh

Lecture

Recording

Module 2: Ethics of Data Usage and Security

Mark Phillips

Lecture

Recording

Module 3a: Cancer Databases

Francis Ouellette

Lecture

Recording

Module 3b: Visualization Tools

Ann Meyer

Lab lecture

Lab Practical

Logging into the Cloud

Zhibin Lu

Lab Practical: Connecting to the Cloud

Lecture

We have set up 27 instances on the Amazon cloud - one for each student. In order to log in to your instance, you will need a security certificate. If you plan on using Linux or Mac OS X, please download this certificate. Otherwise if you plan on using Windows (with Putty), please download this certificate.