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Epigenomics Analysis |
Workshop Pages for Students |
Epigenomic Analysis 2023 Schedule |
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There will be an Amazon Web Services/Unix review session on October 10th from 10am to 3pm EST: the schedule is here and the material is here. It will be held on Zoom, is included in your registration fee, and is optional but highly recommended. The first module (10:10 - 11:10AM) will teach you how to connect to AWS so you can complete the workshop labs. We recommend all students attend this portion. The remaining sections will teach the basics of Unix and using the command line; we recommend that participants who do not have experience with the command line attend this portion.
| Time (Eastern) | Wednesday, October 11 | Time (Eastern) | Thursday, October 12 | Time (Eastern) | Friday, October 13 |
|---|---|---|---|---|---|
| 9:15 | Virtual Arrivals | 9:45 | Virtual Arrivals | 9:45 | Virtual Arrivals |
| 9:30 | Optional AWS connection review (Zhibin Lu) | ||||
| 10:00 | Welcome (Nia Hughes) | 10:00 | Module 3: ChIP-seq Differential Analysis (Edmund Su) |
10:00 | Module 4: WGBS and analysis (Lab part 2 - Héctor Gálvez López) |
| 10:30 | Module 1: Introduction to ChIP sequencing and analysis (Martin Hirst) |
11:00 | Break (30min) | 12:00 | Break (30min) |
| 11:30 | Break (30min) | 11:30 | Module 3: ChIP-seq Differential Analysis (Lab - Edmund Su) | 12:30 | Module 5: Downstream Analysis and Online Tools (David Bujold) |
| 12:00 | Module 1: Compute setup, file format and QC (Lab - Edmund Su) | 13:30 | Break (1h) | 13:30 | Break + Class Photo (1h) |
| 14:00 | Break (1h) | 14:30 | Module 4: WGBS and analysis (Guillaume Bourque) |
14:30 | Module 5 - Downstream Analysis and Online Tools (Lab part 1 - David Bujold) |
| 15:00 | Module 2: Alignment, Peak Calling and Visulization (Martin Hirst) |
15:30 | Break (30min) | 16:30 | Break (30min) |
| 16:00 | Break (30min) | 16:00 | Module 4: WGBS and analysis (Lab part 1 - Héctor Gálvez López) | 17:00 | Module 5 - Downstream Analysis and Online Tools (Lab part 2 - David Bujold) |
| 16:30 | Module 2: Alignment, Peak Calling and Visulization (Lab - Edmund Su) | 18:00 | End of Day 2 | 18:00 | Survey & Closing Remarks |
| 18:30 | End of Day 1 | 18:00 | Virtual Social | 18:30 | End of Day 3 |