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tutorial_page |
/PNA_2023_schedule |
Pathways |
Workshop Pages for Students |
Pathway and Network Analysis 2023 |
/site_images/CBW_pathway_icon.jpg |
|| Time (Eastern) | Wednesday, June 26 | Time (Eastern) | Thursday, June 27 | Time (Eastern) | Module | |:--------------:|:------------------------------------------------------------------------------:|:--------------:|:----------------------------------------------------------------------------------------------------:|:--------------:|:--------------------------------------------------------------------------------------------------------------:| | 8:30 | Arrivals & Check-in | 8:30 | Arrivals | 8:30 | Arrivals | | 9:00 | Welcome (Nia Hughes) | 9:00 | Module 4: More Depth on Pathway and Network Analysis (Lincoln Stein) | 9:00 | Module 7: Review of the tools in integrated workflow. Part1. (Veronique Voisin/Ruth Isserlin/Chaitra Sarathy) | | 9:30 | Module 1: Introduction to pathway and network analysis (Gary Bader) | | | | | | 10:00 | Break (30min) | 10:00 | Break (30min) | 10:30 | Break (30min) | | 10:30 | Module 2: Finding over-represented pathways in gene lists (Veronique Voisin) | 10:30 | Module 4: Lab (Reactome FI) (Chaitra Sarathy) | 11:00 | Module 7: Review of the tools in integrated workflow. Part2. (Veronique Voisin/Ruth Isserlin/Chaitra Sarathy) | | 11:30 | Module 2 lab (Ruth Isserlin) | | | | | | 12:30 | Lunch (1h) | 12:30 | Class Photo and Lunch (1h) | 12:30 | Survey and Closing Remarks | | 13:30 | Module 3: Network visualization and analysis with Cytoscape (Ruth Isserlin) | 13:30 | Module 5: Gene Function Prediction (recorded lecture + 15 min presentation + lab (Veronique Voisin) | | | | 14:30 | Module3 Lab1 : Cytoscape basics. custom network(Ruth Isserlin) | | | | | | 15:00 | Break (30min) | 14:30 | Break (30min) | | | | 15:30 | Module 3 part 2: EnrichmentMap lecture | 15:00 | Module 6: Cell-Cell Communications (Gregory Schwartz) | | | | 16:00 | Module 3 Lab 2: EnrichmentMap and AutoAnnotate | 16:00 | Module 6 lab (Veronique Voisin) | | | | 17:30 | Finished | 17:30 | Finished | | |