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meta.jsonld
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meta.jsonld
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{
"name": "metamodel",
"description": "A metamodel for defining biolink related schemas",
"id": "https://w3id.org/biolink/biolinkml/meta",
"title": "Biolink Schema Metamodel",
"version": "1.7.0",
"imports": [
"biolinkml:types",
"biolinkml:mappings",
"biolinkml:extensions",
"biolinkml:annotations"
],
"license": "https://creativecommons.org/publicdomain/zero/1.0/",
"prefixes": [
{
"prefix_prefix": "meta",
"prefix_reference": "https://w3id.org/biolink/biolinkml/meta/"
},
{
"prefix_prefix": "biolinkml",
"prefix_reference": "https://w3id.org/biolink/biolinkml/"
},
{
"prefix_prefix": "skos",
"prefix_reference": "http://www.w3.org/2004/02/skos/core#"
},
{
"prefix_prefix": "OIO",
"prefix_reference": "http://www.geneontology.org/formats/oboInOwl#"
},
{
"prefix_prefix": "pav",
"prefix_reference": "http://purl.org/pav/"
},
{
"prefix_prefix": "oslc",
"prefix_reference": "http://open-services.net/ns/core#"
},
{
"prefix_prefix": "schema",
"prefix_reference": "http://schema.org/"
},
{
"prefix_prefix": "bibo",
"prefix_reference": "http://purl.org/ontology/bibo/"
}
],
"emit_prefixes": [
"meta",
"rdf",
"rdfs",
"xsd",
"skos",
"dcterms",
"OIO",
"owl",
"pav",
"IAO",
"biolinkml"
],
"default_curi_maps": [
"semweb_context"
],
"default_prefix": "meta",
"default_range": "string",
"subsets": [
{
"name": "owl",
"definition_uri": "https://w3id.org/biolink/biolinkml/meta/Owl",
"description": "Set of slots that appear in the OWL representation of a model",
"from_schema": "https://w3id.org/biolink/biolinkml/meta",
"type": "SubsetDefinition"
}
],
"types": [
{
"name": "string",
"definition_uri": "https://w3id.org/biolink/biolinkml/meta/types/String",
"description": "A character string",
"from_schema": "https://w3id.org/biolink/biolinkml/types",
"imported_from": "biolinkml:types",
"base": "str",
"uri": "http://www.w3.org/2001/XMLSchema#string",
"type": "TypeDefinition"
},
{
"name": "integer",
"definition_uri": "https://w3id.org/biolink/biolinkml/meta/types/Integer",
"description": "An integer",
"from_schema": "https://w3id.org/biolink/biolinkml/types",
"imported_from": "biolinkml:types",
"base": "int",
"uri": "http://www.w3.org/2001/XMLSchema#integer",
"type": "TypeDefinition"
},
{
"name": "boolean",
"definition_uri": "https://w3id.org/biolink/biolinkml/meta/types/Boolean",
"description": "A binary (true or false) value",
"from_schema": "https://w3id.org/biolink/biolinkml/types",
"imported_from": "biolinkml:types",
"base": "Bool",
"uri": "http://www.w3.org/2001/XMLSchema#boolean",
"repr": "bool",
"type": "TypeDefinition"
},
{
"name": "float",
"definition_uri": "https://w3id.org/biolink/biolinkml/meta/types/Float",
"description": "A real number that conforms to the xsd:float specification",
"from_schema": "https://w3id.org/biolink/biolinkml/types",
"imported_from": "biolinkml:types",
"base": "float",
"uri": "http://www.w3.org/2001/XMLSchema#float",
"type": "TypeDefinition"
},
{
"name": "double",
"definition_uri": "https://w3id.org/biolink/biolinkml/meta/types/Double",
"description": "A real number that conforms to the xsd:double specification",
"from_schema": "https://w3id.org/biolink/biolinkml/types",
"imported_from": "biolinkml:types",
"base": "float",
"uri": "http://www.w3.org/2001/XMLSchema#double",
"type": "TypeDefinition"
},
{
"name": "decimal",
"definition_uri": "https://w3id.org/biolink/biolinkml/meta/types/Decimal",
"description": "A real number with arbitrary precision that conforms to the xsd:decimal specification",
"from_schema": "https://w3id.org/biolink/biolinkml/types",
"imported_from": "biolinkml:types",
"base": "Decimal",
"uri": "http://www.w3.org/2001/XMLSchema#decimal",
"type": "TypeDefinition"
},
{
"name": "time",
"definition_uri": "https://w3id.org/biolink/biolinkml/meta/types/Time",
"description": "A time object represents a (local) time of day, independent of any particular day",
"notes": [
"URI is dateTime because OWL reasoners don't work with straight date or time"
],
"from_schema": "https://w3id.org/biolink/biolinkml/types",
"imported_from": "biolinkml:types",
"base": "XSDTime",
"uri": "http://www.w3.org/2001/XMLSchema#dateTime",
"repr": "str",
"type": "TypeDefinition"
},
{
"name": "date",
"definition_uri": "https://w3id.org/biolink/biolinkml/meta/types/Date",
"description": "a date (year, month and day) in an idealized calendar",
"notes": [
"URI is dateTime because OWL reasoners don't work with straight date or time"
],
"from_schema": "https://w3id.org/biolink/biolinkml/types",
"imported_from": "biolinkml:types",
"base": "XSDDate",
"uri": "http://www.w3.org/2001/XMLSchema#date",
"repr": "str",
"type": "TypeDefinition"
},
{
"name": "datetime",
"definition_uri": "https://w3id.org/biolink/biolinkml/meta/types/Datetime",
"description": "The combination of a date and time",
"from_schema": "https://w3id.org/biolink/biolinkml/types",
"imported_from": "biolinkml:types",
"base": "XSDDateTime",
"uri": "http://www.w3.org/2001/XMLSchema#dateTime",
"repr": "str",
"type": "TypeDefinition"
},
{
"name": "uriorcurie",
"definition_uri": "https://w3id.org/biolink/biolinkml/meta/types/Uriorcurie",
"description": "a URI or a CURIE",
"from_schema": "https://w3id.org/biolink/biolinkml/types",
"imported_from": "biolinkml:types",
"base": "URIorCURIE",
"uri": "http://www.w3.org/2001/XMLSchema#anyURI",
"repr": "str",
"type": "TypeDefinition"
},
{
"name": "uri",
"definition_uri": "https://w3id.org/biolink/biolinkml/meta/types/Uri",
"description": "a complete URI",
"from_schema": "https://w3id.org/biolink/biolinkml/types",
"imported_from": "biolinkml:types",
"base": "URI",
"uri": "http://www.w3.org/2001/XMLSchema#anyURI",
"repr": "str",
"type": "TypeDefinition"
},
{
"name": "ncname",
"definition_uri": "https://w3id.org/biolink/biolinkml/meta/types/Ncname",
"description": "Prefix part of CURIE",
"from_schema": "https://w3id.org/biolink/biolinkml/types",
"imported_from": "biolinkml:types",
"base": "NCName",
"uri": "http://www.w3.org/2001/XMLSchema#string",
"repr": "str",
"type": "TypeDefinition"
},
{
"name": "objectidentifier",
"definition_uri": "https://w3id.org/biolink/biolinkml/meta/types/Objectidentifier",
"description": "A URI or CURIE that represents an object in the model.",
"comments": [
"Used for inheritence and type checking"
],
"from_schema": "https://w3id.org/biolink/biolinkml/types",
"imported_from": "biolinkml:types",
"base": "ElementIdentifier",
"uri": "http://www.w3.org/ns/shex#iri",
"repr": "str",
"type": "TypeDefinition"
},
{
"name": "nodeidentifier",
"definition_uri": "https://w3id.org/biolink/biolinkml/meta/types/Nodeidentifier",
"description": "A URI, CURIE or BNODE that represents a node in a model.",
"from_schema": "https://w3id.org/biolink/biolinkml/types",
"imported_from": "biolinkml:types",
"base": "NodeIdentifier",
"uri": "http://www.w3.org/ns/shex#nonLiteral",
"repr": "str",
"type": "TypeDefinition"
}
],
"enums": [
{
"name": "pv_formula_options",
"definition_uri": "https://w3id.org/biolink/biolinkml/meta/PvFormulaOptions",
"description": "The formula used to generate the set of permissible values from the code_set values",
"notes": [
"{'Q1': 'Do we need a CURIEorURIE entry?'}",
"{'Q2': 'Who defines the namespaces for the CURIE form?'}"
],
"from_schema": "https://w3id.org/biolink/biolinkml/meta",
"permissible_values": [
{
"text": "CODE",
"description": "The permissible values are the set of possible codes in the code set"
},
{
"text": "CURIE",
"description": "The permissible values are the set of CURIES in the code set"
},
{
"text": "URI",
"description": "The permissible values are the set of code URIs in the code set"
},
{
"text": "FHIR_CODING",
"description": "The permissible values are the set of FHIR coding elements derived from the code set"
}
]
}
],
"slots": [
{
"name": "name",
"definition_uri": "https://w3id.org/biolink/biolinkml/meta/name",
"mappings": [
"rdfs:label",
"schema:name"
],
"description": "the unique name of the element within the context of the schema. Name is combined with the default prefix to form the globally unique subject of the target class.",
"in_subset": [
"owl"
],
"from_schema": "https://w3id.org/biolink/biolinkml/meta",
"see_also": [
"https://en.wikipedia.org/wiki/Data_element_name"
],
"domain": "Element",
"range": "string",
"slot_uri": "http://www.w3.org/2000/01/rdf-schema#label",
"required": true,
"identifier": true,
"owner": "Element",
"domain_of": [
"Element"
],
"type": "SlotDefinition"
},
{
"name": "definition_uri",
"definition_uri": "https://w3id.org/biolink/biolinkml/meta/definition_uri",
"description": "the \"native\" URI of the element",
"comments": [
"Formed by combining the default_prefix with the mangled element"
],
"from_schema": "https://w3id.org/biolink/biolinkml/meta",
"domain": "Element",
"range": "uriorcurie",
"slot_uri": "https://w3id.org/biolink/biolinkml/meta/definition_uri",
"readonly": "filled in by the schema loader",
"owner": "Element",
"domain_of": [
"Element"
],
"type": "SlotDefinition"
},
{
"name": "id_prefixes",
"definition_uri": "https://w3id.org/biolink/biolinkml/meta/id_prefixes",
"description": "the identifier of this class or slot must begin with one of the URIs referenced by this prefix",
"from_schema": "https://w3id.org/biolink/biolinkml/meta",
"domain": "Element",
"range": "ncname",
"slot_uri": "https://w3id.org/biolink/biolinkml/meta/id_prefixes",
"multivalued": true,
"owner": "Element",
"domain_of": [
"Element"
],
"type": "SlotDefinition"
},
{
"name": "description",
"definition_uri": "https://w3id.org/biolink/biolinkml/meta/description",
"mappings": [
"skos:definition"
],
"description": "a description of the element's purpose and use",
"in_subset": [
"owl"
],
"from_schema": "https://w3id.org/biolink/biolinkml/meta",
"domain": "Element",
"range": "string",
"slot_uri": "http://www.w3.org/2004/02/skos/core#definition",
"owner": "PermissibleValue",
"domain_of": [
"Element",
"PermissibleValue"
],
"type": "SlotDefinition"
},
{
"name": "aliases",
"definition_uri": "https://w3id.org/biolink/biolinkml/meta/aliases",
"mappings": [
"skos:altLabel"
],
"from_schema": "https://w3id.org/biolink/biolinkml/meta",
"domain": "Element",
"range": "string",
"slot_uri": "http://www.w3.org/2004/02/skos/core#altLabel",
"multivalued": true,
"owner": "Element",
"domain_of": [
"Element"
],
"type": "SlotDefinition"
},
{
"name": "deprecated",
"definition_uri": "https://w3id.org/biolink/biolinkml/meta/deprecated",
"description": "Description of why and when this element will no longer be used",
"from_schema": "https://w3id.org/biolink/biolinkml/meta",
"domain": "Element",
"range": "string",
"slot_uri": "https://w3id.org/biolink/biolinkml/meta/deprecated",
"owner": "PermissibleValue",
"domain_of": [
"Element",
"PermissibleValue"
],
"type": "SlotDefinition"
},
{
"name": "todos",
"definition_uri": "https://w3id.org/biolink/biolinkml/meta/todos",
"description": "Outstanding issue that needs resolution",
"from_schema": "https://w3id.org/biolink/biolinkml/meta",
"domain": "Element",
"range": "string",
"slot_uri": "https://w3id.org/biolink/biolinkml/meta/todos",
"multivalued": true,
"owner": "PermissibleValue",
"domain_of": [
"Element",
"PermissibleValue"
],
"type": "SlotDefinition"
},
{
"name": "notes",
"definition_uri": "https://w3id.org/biolink/biolinkml/meta/notes",
"mappings": [
"skos:editorialNote"
],
"description": "editorial notes about an element intended for internal consumption",
"in_subset": [
"owl"
],
"from_schema": "https://w3id.org/biolink/biolinkml/meta",
"domain": "Element",
"range": "string",
"slot_uri": "http://www.w3.org/2004/02/skos/core#editorialNote",
"multivalued": true,
"owner": "PermissibleValue",
"domain_of": [
"Element",
"PermissibleValue"
],
"type": "SlotDefinition"
},
{
"name": "comments",
"definition_uri": "https://w3id.org/biolink/biolinkml/meta/comments",
"mappings": [
"skos:note"
],
"description": "notes and comments about an element intended for external consumption",
"in_subset": [
"owl"
],
"from_schema": "https://w3id.org/biolink/biolinkml/meta",
"domain": "Element",
"range": "string",
"slot_uri": "http://www.w3.org/2004/02/skos/core#note",
"multivalued": true,
"owner": "PermissibleValue",
"domain_of": [
"Element",
"PermissibleValue"
],
"type": "SlotDefinition"
},
{
"name": "in_subset",
"definition_uri": "https://w3id.org/biolink/biolinkml/meta/in_subset",
"mappings": [
"OIO:inSubset"
],
"description": "used to indicate membership of a term in a defined subset of biolink terms used for a particular domain or application (e.g. the translator_minimal subset holding the minimal set of predicates used in a translator knowledge graph)",
"from_schema": "https://w3id.org/biolink/biolinkml/meta",
"domain": "Element",
"range": "SubsetDefinition",
"slot_uri": "http://www.geneontology.org/formats/oboInOwl#inSubset",
"multivalued": true,
"owner": "PermissibleValue",
"domain_of": [
"Element",
"PermissibleValue"
],
"type": "SlotDefinition"
},
{
"name": "from_schema",
"definition_uri": "https://w3id.org/biolink/biolinkml/meta/from_schema",
"mappings": [
"skos:inScheme"
],
"description": "id of the schema that defined the element",
"notes": [
"A stronger model would be range schema_definition, but this doesn't address the import model"
],
"from_schema": "https://w3id.org/biolink/biolinkml/meta",
"domain": "Element",
"range": "uri",
"slot_uri": "http://www.w3.org/2004/02/skos/core#inScheme",
"readonly": "supplied by the schema loader",
"owner": "PermissibleValue",
"domain_of": [
"Element",
"PermissibleValue"
],
"type": "SlotDefinition"
},
{
"name": "imported_from",
"definition_uri": "https://w3id.org/biolink/biolinkml/meta/imported_from",
"description": "the imports entry that this element was derived from. Empty means primary source",
"from_schema": "https://w3id.org/biolink/biolinkml/meta",
"domain": "Element",
"range": "string",
"slot_uri": "https://w3id.org/biolink/biolinkml/meta/imported_from",
"readonly": "supplied by the schema loader",
"owner": "PermissibleValue",
"domain_of": [
"Element",
"PermissibleValue"
],
"type": "SlotDefinition"
},
{
"name": "see_also",
"definition_uri": "https://w3id.org/biolink/biolinkml/meta/see_also",
"mappings": [
"rdfs:seeAlso"
],
"description": "a reference",
"in_subset": [
"owl"
],
"from_schema": "https://w3id.org/biolink/biolinkml/meta",
"domain": "Element",
"range": "uriorcurie",
"slot_uri": "http://www.w3.org/2000/01/rdf-schema#seeAlso",
"multivalued": true,
"owner": "PermissibleValue",
"domain_of": [
"Element",
"PermissibleValue"
],
"type": "SlotDefinition"
},
{
"name": "created_by",
"definition_uri": "https://w3id.org/biolink/biolinkml/meta/created_by",
"mappings": [
"pav:createdBy"
],
"description": "agent that created the element",
"from_schema": "https://w3id.org/biolink/biolinkml/meta",
"domain": "Element",
"range": "uriorcurie",
"slot_uri": "http://purl.org/pav/createdBy",
"owner": "created_by",
"domain_of": [
"Definition"
],
"type": "SlotDefinition"
},
{
"name": "created_on",
"definition_uri": "https://w3id.org/biolink/biolinkml/meta/created_on",
"mappings": [
"pav:createdOn"
],
"description": "time at which the element was created",
"from_schema": "https://w3id.org/biolink/biolinkml/meta",
"domain": "Element",
"range": "datetime",
"slot_uri": "http://purl.org/pav/createdOn",
"owner": "created_on",
"domain_of": [
"Definition"
],
"type": "SlotDefinition"
},
{
"name": "last_updated_on",
"definition_uri": "https://w3id.org/biolink/biolinkml/meta/last_updated_on",
"mappings": [
"pav:lastUpdatedOn"
],
"description": "time at which the element was last updated",
"from_schema": "https://w3id.org/biolink/biolinkml/meta",
"domain": "Element",
"range": "datetime",
"slot_uri": "http://purl.org/pav/lastUpdatedOn",
"owner": "last_updated_on",
"domain_of": [
"Definition"
],
"type": "SlotDefinition"
},
{
"name": "modified_by",
"definition_uri": "https://w3id.org/biolink/biolinkml/meta/modified_by",
"mappings": [
"oslc:modifiedBy"
],
"description": "agent that modified the element",
"from_schema": "https://w3id.org/biolink/biolinkml/meta",
"domain": "Element",
"range": "uriorcurie",
"slot_uri": "http://open-services.net/ns/core#modifiedBy",
"owner": "modified_by",
"domain_of": [
"Definition"
],
"type": "SlotDefinition"
},
{
"name": "status",
"definition_uri": "https://w3id.org/biolink/biolinkml/meta/status",
"mappings": [
"bibo:status"
],
"description": "status of the element",
"examples": [
{
"value": "bibo:draft",
"type": "Example"
}
],
"from_schema": "https://w3id.org/biolink/biolinkml/meta",
"domain": "Element",
"range": "uriorcurie",
"slot_uri": "http://purl.org/ontology/bibo/status",
"owner": "status",
"domain_of": [
"Definition"
],
"type": "SlotDefinition"
},
{
"name": "is_a",
"definition_uri": "https://w3id.org/biolink/biolinkml/meta/is_a",
"description": "specifies single-inheritance between classes or slots. While multiple inheritance is not allowed, mixins can be provided effectively providing the same thing. The semantics are the same when translated to formalisms that allow MI (e.g. RDFS/OWL). When translating to a SI framework (e.g. java classes, python classes) then is a is used. When translating a framework without polymorphism (e.g. json-schema, solr document schema) then is a and mixins are recursively unfolded",
"from_schema": "https://w3id.org/biolink/biolinkml/meta",
"abstract": true,
"domain": "Definition",
"range": "Definition",
"slot_uri": "https://w3id.org/biolink/biolinkml/meta/is_a",
"owner": "Definition",
"domain_of": [
"Definition"
],
"type": "SlotDefinition"
},
{
"name": "abstract",
"definition_uri": "https://w3id.org/biolink/biolinkml/meta/abstract",
"description": "an abstract class is a high level class or slot that is typically used to group common slots together and cannot be directly instantiated.",
"from_schema": "https://w3id.org/biolink/biolinkml/meta",
"domain": "Definition",
"range": "boolean",
"slot_uri": "https://w3id.org/biolink/biolinkml/meta/abstract",
"owner": "Definition",
"domain_of": [
"Definition"
],
"type": "SlotDefinition"
},
{
"name": "mixin",
"definition_uri": "https://w3id.org/biolink/biolinkml/meta/mixin",
"description": "this slot or class can only be used as a mixin -- equivalent to abstract",
"from_schema": "https://w3id.org/biolink/biolinkml/meta",
"domain": "Definition",
"range": "boolean",
"slot_uri": "https://w3id.org/biolink/biolinkml/meta/mixin",
"owner": "Definition",
"domain_of": [
"Definition"
],
"type": "SlotDefinition"
},
{
"name": "mixins",
"definition_uri": "https://w3id.org/biolink/biolinkml/meta/mixins",
"description": "List of definitions to be mixed in. Targets may be any definition of the same type",
"from_schema": "https://w3id.org/biolink/biolinkml/meta",
"domain": "Definition",
"range": "Definition",
"slot_uri": "https://w3id.org/biolink/biolinkml/meta/mixins",
"multivalued": true,
"owner": "Definition",
"domain_of": [
"Definition"
],
"type": "SlotDefinition"
},
{
"name": "apply_to",
"definition_uri": "https://w3id.org/biolink/biolinkml/meta/apply_to",
"description": "Used to extend class or slot definitions. For example, if we have a core schema where a gene has two slots for identifier and symbol, and we have a specialized schema for my_organism where we wish to add a slot systematic_name, we can avoid subclassing by defining a class gene_my_organism, adding the slot to this class, and then adding an apply_to pointing to the gene class. The new slot will be 'injected into' the gene class.",
"from_schema": "https://w3id.org/biolink/biolinkml/meta",
"domain": "Definition",
"range": "Definition",
"slot_uri": "https://w3id.org/biolink/biolinkml/meta/apply_to",
"multivalued": true,
"owner": "Definition",
"domain_of": [
"Definition"
],
"type": "SlotDefinition"
},
{
"name": "values_from",
"definition_uri": "https://w3id.org/biolink/biolinkml/meta/values_from",
"description": "the identifier of a \"value set\" -- a set of identifiers that form the possible values for the range of a slot",
"from_schema": "https://w3id.org/biolink/biolinkml/meta",
"domain": "Definition",
"range": "uriorcurie",
"slot_uri": "https://w3id.org/biolink/biolinkml/meta/values_from",
"multivalued": true,
"owner": "Definition",
"domain_of": [
"Definition"
],
"type": "SlotDefinition"
},
{
"name": "code_set",
"definition_uri": "https://w3id.org/biolink/biolinkml/meta/code_set",
"description": "the identifier of an enumeration code set.",
"todos": [
"this should be able to connect to an existing code set from TCCM"
],
"from_schema": "https://w3id.org/biolink/biolinkml/meta",
"domain": "EnumDefinition",
"range": "uriorcurie",
"slot_uri": "https://w3id.org/biolink/biolinkml/meta/code_set",
"owner": "EnumDefinition",
"domain_of": [
"EnumDefinition"
],
"type": "SlotDefinition"
},
{
"name": "code_set_version",
"definition_uri": "https://w3id.org/biolink/biolinkml/meta/code_set_version",
"description": "the version identifier of the enumeration code set",
"comments": [
"we assume that version identifiers lexically sort in temporal order. Recommend semver when possible"
],
"from_schema": "https://w3id.org/biolink/biolinkml/meta",
"domain": "EnumDefinition",
"range": "string",
"slot_uri": "https://w3id.org/biolink/biolinkml/meta/code_set_version",
"owner": "EnumDefinition",
"domain_of": [
"EnumDefinition"
],
"type": "SlotDefinition"
},
{
"name": "code_set_tag",
"definition_uri": "https://w3id.org/biolink/biolinkml/meta/code_set_tag",
"description": "the version tag of the enumeration code set",
"comments": [
"enum_definition cannot have both a code_set_tag and a code_set_version"
],
"from_schema": "https://w3id.org/biolink/biolinkml/meta",
"domain": "EnumDefinition",
"range": "string",
"slot_uri": "https://w3id.org/biolink/biolinkml/meta/code_set_tag",
"owner": "EnumDefinition",
"domain_of": [
"EnumDefinition"
],
"type": "SlotDefinition"
},
{
"name": "pv_formula",
"definition_uri": "https://w3id.org/biolink/biolinkml/meta/pv_formula",
"description": "Defines the specific formula to be used to generate the permissible values.",
"comments": [
"you cannot have BOTH the permissible_values and permissible_value_formula tag",
"code_set must be supplied for this to be valid"
],
"from_schema": "https://w3id.org/biolink/biolinkml/meta",
"domain": "EnumDefinition",
"range": "pv_formula_options",
"slot_uri": "https://w3id.org/biolink/biolinkml/meta/pv_formula",
"owner": "EnumDefinition",
"domain_of": [
"EnumDefinition"
],
"type": "SlotDefinition"
},
{
"name": "permissible_values",
"definition_uri": "https://w3id.org/biolink/biolinkml/meta/permissible_values",
"description": "A list of possible values for a slot range",
"from_schema": "https://w3id.org/biolink/biolinkml/meta",
"domain": "EnumDefinition",
"range": "PermissibleValue",
"slot_uri": "https://w3id.org/biolink/biolinkml/meta/permissible_values",
"multivalued": true,
"inlined": true,
"owner": "EnumDefinition",
"domain_of": [
"EnumDefinition"
],
"type": "SlotDefinition"
},
{
"name": "text",
"definition_uri": "https://w3id.org/biolink/biolinkml/meta/text",
"from_schema": "https://w3id.org/biolink/biolinkml/meta",
"domain": "PermissibleValue",
"range": "string",
"slot_uri": "https://w3id.org/biolink/biolinkml/meta/text",
"required": true,
"identifier": true,
"owner": "PermissibleValue",
"domain_of": [
"PermissibleValue"
],
"type": "SlotDefinition"
},
{
"name": "meaning",
"definition_uri": "https://w3id.org/biolink/biolinkml/meta/meaning",
"description": "the value meaning (in the 11179 sense) of a permissible value",
"notes": [
"we may want to change the range of this (and other) elements in the model to an entitydescription type construct"
],
"from_schema": "https://w3id.org/biolink/biolinkml/meta",
"domain": "PermissibleValue",
"range": "uriorcurie",
"slot_uri": "https://w3id.org/biolink/biolinkml/meta/meaning",
"owner": "PermissibleValue",
"domain_of": [
"PermissibleValue"
],
"type": "SlotDefinition"
},
{
"name": "id",
"definition_uri": "https://w3id.org/biolink/biolinkml/meta/id",
"description": "The official schema URI",
"from_schema": "https://w3id.org/biolink/biolinkml/meta",
"domain": "SchemaDefinition",
"range": "uri",
"slot_uri": "https://w3id.org/biolink/biolinkml/meta/id",
"required": true,
"owner": "SchemaDefinition",
"domain_of": [
"SchemaDefinition"
],
"type": "SlotDefinition"
},
{
"name": "emit_prefixes",
"definition_uri": "https://w3id.org/biolink/biolinkml/meta/emit_prefixes",
"description": "a list of Curie prefixes that are used in the representation of instances of the model. All prefixes in this list are added to the prefix sections of the target models.",
"from_schema": "https://w3id.org/biolink/biolinkml/meta",
"domain": "SchemaDefinition",
"range": "ncname",
"slot_uri": "https://w3id.org/biolink/biolinkml/meta/emit_prefixes",
"multivalued": true,
"owner": "SchemaDefinition",
"domain_of": [
"SchemaDefinition"
],
"type": "SlotDefinition"
},
{
"name": "title",
"definition_uri": "https://w3id.org/biolink/biolinkml/meta/title",
"mappings": [
"dcterms:title"
],
"description": "the official title of the schema",
"in_subset": [
"owl"
],
"from_schema": "https://w3id.org/biolink/biolinkml/meta",
"domain": "SchemaDefinition",
"range": "string",
"slot_uri": "http://purl.org/dc/terms/title",
"owner": "SchemaDefinition",
"domain_of": [
"SchemaDefinition"
],
"type": "SlotDefinition"
},
{
"name": "version",
"definition_uri": "https://w3id.org/biolink/biolinkml/meta/version",
"mappings": [
"pav:version",
"schema:schemaVersion"
],
"description": "particular version of schema",
"from_schema": "https://w3id.org/biolink/biolinkml/meta",
"domain": "SchemaDefinition",
"range": "string",
"slot_uri": "http://purl.org/pav/version",
"owner": "SchemaDefinition",
"domain_of": [
"SchemaDefinition"
],
"type": "SlotDefinition"
},
{
"name": "imports",
"definition_uri": "https://w3id.org/biolink/biolinkml/meta/imports",
"description": "other schemas that are included in this schema",
"from_schema": "https://w3id.org/biolink/biolinkml/meta",
"domain": "SchemaDefinition",
"range": "uriorcurie",
"slot_uri": "https://w3id.org/biolink/biolinkml/meta/imports",
"multivalued": true,
"owner": "SchemaDefinition",
"domain_of": [
"SchemaDefinition"
],
"type": "SlotDefinition"
},
{
"name": "license",
"definition_uri": "https://w3id.org/biolink/biolinkml/meta/license",
"mappings": [
"dcterms:license"
],
"description": "license for the schema",
"in_subset": [
"owl"
],
"from_schema": "https://w3id.org/biolink/biolinkml/meta",
"domain": "SchemaDefinition",
"range": "string",
"slot_uri": "http://purl.org/dc/terms/license",
"owner": "SchemaDefinition",
"domain_of": [
"SchemaDefinition"
],
"type": "SlotDefinition"
},
{
"name": "default_curi_maps",
"definition_uri": "https://w3id.org/biolink/biolinkml/meta/default_curi_maps",
"description": "ordered list of prefixcommon biocontexts to be fetched to resolve id prefixes and inline prefix variables",
"from_schema": "https://w3id.org/biolink/biolinkml/meta",
"domain": "SchemaDefinition",
"range": "string",
"slot_uri": "https://w3id.org/biolink/biolinkml/meta/default_curi_maps",
"multivalued": true,
"owner": "SchemaDefinition",
"domain_of": [
"SchemaDefinition"
],
"type": "SlotDefinition"
},
{
"name": "default_prefix",
"definition_uri": "https://w3id.org/biolink/biolinkml/meta/default_prefix",
"description": "default and base prefix -- used for ':' identifiers, @base and @vocab",
"from_schema": "https://w3id.org/biolink/biolinkml/meta",
"domain": "SchemaDefinition",
"range": "string",
"slot_uri": "https://w3id.org/biolink/biolinkml/meta/default_prefix",
"ifabsent": "default_ns",
"owner": "SchemaDefinition",
"domain_of": [
"SchemaDefinition"
],
"type": "SlotDefinition"
},
{
"name": "default_range",
"definition_uri": "https://w3id.org/biolink/biolinkml/meta/default_range",
"description": "default slot range to be used if range element is omitted from a slot definition",
"notes": [
"restricted to type definitions for the time being. Could be broadened if required"
],
"from_schema": "https://w3id.org/biolink/biolinkml/meta",
"domain": "SchemaDefinition",
"range": "TypeDefinition",
"slot_uri": "https://w3id.org/biolink/biolinkml/meta/default_range",
"owner": "SchemaDefinition",
"domain_of": [
"SchemaDefinition"
],
"type": "SlotDefinition"
},
{
"name": "subsets",
"definition_uri": "https://w3id.org/biolink/biolinkml/meta/subsets",
"description": "list of subsets referenced in this model",
"from_schema": "https://w3id.org/biolink/biolinkml/meta",
"domain": "SchemaDefinition",
"range": "SubsetDefinition",
"slot_uri": "https://w3id.org/biolink/biolinkml/meta/subsets",
"multivalued": true,
"inlined": true,
"owner": "SchemaDefinition",
"domain_of": [
"SchemaDefinition"
],
"type": "SlotDefinition"
},
{
"name": "types",
"definition_uri": "https://w3id.org/biolink/biolinkml/meta/types",
"description": "data types used in the model",
"from_schema": "https://w3id.org/biolink/biolinkml/meta",
"domain": "SchemaDefinition",
"range": "TypeDefinition",
"slot_uri": "https://w3id.org/biolink/biolinkml/meta/types",
"multivalued": true,
"inlined": true,
"owner": "SchemaDefinition",
"domain_of": [
"SchemaDefinition"
],
"type": "SlotDefinition"
},
{
"name": "enums",
"definition_uri": "https://w3id.org/biolink/biolinkml/meta/enums",
"description": "enumerated ranges",
"from_schema": "https://w3id.org/biolink/biolinkml/meta",
"domain": "SchemaDefinition",